Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq1 113 5e-20 seq5 105 8e-18 seq2 100 3e-16 >seq7 Length=35964315 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | || ||| || ||||| ||| Sbjct 14546038 CCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 14545979 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| ||||| ||| || || ||| |||||| ||||| |||||| Sbjct 14545978 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATATTGTGAATTGAG 14545919 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | |||||| | || |||||||||||| Sbjct 14545918 ACACCAATTCCTCCAGCGCATTTGCTTATCATAGCACATTCTGAGAGAGTATCATAAATT 14545859 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 14545858 CCCTCAATACTATCATCTTTCAT 14545836 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | |||||||| || |||| | || ||| || ||||| ||| Sbjct 3450177 CCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 3450236 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| ||||| ||| || || ||| |||||| || || |||||| Sbjct 3450237 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATGTTGGGAATTGAG 3450296 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| |||||| | || |||||||||||| Sbjct 3450297 ACACCAATTCCTCCAGCGCATTTGCTTATCGCAGCACATTCTGAGAGAGTATCATAAATT 3450356 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 3450357 CCCTCAATACTATCATCTTTCAT 3450379 >seq1 Length=42145699 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | |||||||| || |||| | || ||| || ||||| ||| Sbjct 40778246 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 40778187 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| ||||| ||| || || ||| |||||| || || |||||| Sbjct 40778186 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATGTTGTGAATTGAG 40778127 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACA--CCGTTTAAGGGTATCATAAA 48537 | ||| || || || || ||| ||| | |||||| ||| || |||||||||| Sbjct 40778126 ACACCAATTCCTCCAGCGCATTTGCTTATCACAGCACATTCCGAG--AGAGTATCATAAA 40778069 Query 48538 TTCCTTCTATACTATCATCTATCAT 48562 |||| || |||||||||||| |||| Sbjct 40778068 TTCCCTCAATACTATCATCTTTCAT 40778044 >seq5 Length=47252588 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | |||||||| || |||| | || ||| || ||||| ||| Sbjct 3403332 CCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 3403273 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| ||||| ||| || || ||| |||||| || || |||||| Sbjct 3403272 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATGTTGTGAATTGAG 3403213 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| |||| | | || |||||||||||| Sbjct 3403212 ACACCAATTCCTCCAGCGCATTTGCTTATCGTAGCATATTCTGAGAGAGTATCATAAATT 3403153 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 3403152 CCCTCAATACTATCATCTTTCAT 3403130 >seq2 Length=49199997 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | |||||||| || |||| | || ||| || ||||| ||| Sbjct 20643118 CCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 20643059 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| ||||| ||| || || | |||||| || || |||||| Sbjct 20643058 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCGTAGTAGCTCGAATGTTGTGAATTGAG 20642999 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| |||||| | || |||||||||||| Sbjct 20642998 ACACCAATTCCTCCAGCGCATTTGCTTATCGCAGCACATTCTGAGAGAGTATCATAAATT 20642939 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 20642938 CCCTCAATACTATCATCTTTCAT 20642916 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | |||||||| ||| | | || ||| || ||| | ||| Sbjct 20754557 CCACCTTGATCAACATAACGGGCAGTATCATTACA----CGTAGCATAGGAACAGTTCCA 20754612 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| ||||| |||||| || ||| |||||| || || |||||| Sbjct 20754613 TTAGAAGTACCATTTGTTCCTCGAATATAGCTCCCAGTAGCTCGAATGTTGTGAATTGAG 20754672 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| |||||| || |||||||||||| Sbjct 20754673 ACACCAATTCCTCCAGCGCATTTGCTTATCGCAGCACATTCCAAGAGAGTATCATAAATT 20754732 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || | ||| |||||| | |||| Sbjct 20754733 CCCTTAATATTATCATATTTCAT 20754755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106432116680