Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq9 113 4e-19 seq3 111 1e-18 seq2 93.3 3e-13 seq8 91.5 1e-12 seq6 86.0 5e-11 >seq9 Length=58970307 Score = 113 bits (124), Expect = 4e-19 Identities = 336/511 (66%), Gaps = 8/511 (2%) Strand=Plus/Minus Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 || ||| | ||||| ||||| || || ||||| |||| ||||||||||| || || Sbjct 1845171 AGGGATGCCAAGATGGATAAGAGCACTGTCCATGATGTTGTCCTTGTTGGTGGTTCGACT 1845112 Query 552144 AGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 || || || ||| | | | || | || ||| || |||||| || || | || Sbjct 1845111 AGGATCCCCAAAGTCCAGCAGCTGCTGCAGGACTTCTT-CAATGGAAAGGAACTT--TGC 1845055 Query 552203 AAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260 ||| | | ||||| ||||| |||||||||||||| || || |||| || ||||| ||| Sbjct 1845054 AAGAGCATCAATCCTGATGAAGCTGTTGCCTATGGCGCTGCCGTTCAGGCTGCTATCCTT 1844995 Query 552261 TCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCT 552320 ||| | |||| || | || | || | || | ||||| || || || ||| Sbjct 1844994 AGTGGTGAGGGCAATGAGAAGGTTCAGGACCTTCTCCTCCTCGATGTGACCCCACTGTCT 1844935 Query 552321 CTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATT 552380 |||||| | ||||| | ||||| | |||||| ||||| || || || || ||| Sbjct 1844934 CTTGGTCTTGAAACTGCCGGAGGAGTCATGACTGTCCTTATTCCAAGGAACACCACCATT 1844875 Query 552381 CCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATT 552440 || || ||| | || || || || || || ||||| || ||| ||| || Sbjct 1844874 CCAACCAAGAAAGAGCAGGTCTTCTCCACCTACTCGGATAACCAGCCTGGTGTGTTGATC 1844815 Query 552441 CAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAAT 552500 || ||| ||| || || || | || | || || |||| ||||| | ||| | Sbjct 1844814 CAGGTTTATGAGGGCGAGAGGACCCGGACCAGGGACAACAATCTCCTTGGGAAATTTGAG 1844755 Query 552501 TTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT-TACTTTCGATAT 552559 | || || || ||||||||| | || || || || || || | |||| || || Sbjct 1844754 CTCTCTGGAATCCCCCCTGCTCCTAGGGGTGTCCCTCAGATCACTGTATGCTTT-GACAT 1844696 Query 552560 CGATGCCAATGGAATTTTGAATGTGACTGCT 552590 |||||| ||||| ||| ||||||| ||||| Sbjct 1844695 CGATGCTAATGGTATTCTGAATGTCTCTGCT 1844665 Score = 107 bits (118), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || |||||||| || || | || || ||||| |||| Sbjct 1845719 ATGCTGTGGTTACTGTTCCTGCTTACTTTAATGATTCCCAGAGGCAGGCAACTAAGGATG 1845660 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| |||||| || || ||||| | ||||| |||||||| || |||||||||||| Sbjct 1845659 CTGGTGTTATTGCCGGGCTCAATGTCATGCGTATCATCAATGAGCCAACTGCTGCTGCAA 1845600 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 1845599 TTGCCTATGGTCTTGACAA 1845581 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| ||||| ||||| ||||| | || ||||| || || || |||||| Sbjct 13464829 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCT 13464888 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || ||||| || ||| ||||| | || ||||||||||| || || ||||| || Sbjct 13464889 GGCCGCATTGCGGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 13464948 Query 550520 GCATATGGA 550528 | |||||| Sbjct 13464949 TCTTATGGA 13464957 >seq3 Length=50651951 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| |||||||| || || || |||||| | ||| | Sbjct 5577437 AAATTACAAAAGCAGTGGTTACTGTCCCAGCATACTTCAACGATTCACAAAGGACAGCAA 5577378 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| |||||||| || || | |||||||||||||| |||||||| |||| Sbjct 5577377 CAAAAGATGCTGGTCGTATTGCAGGGCTGGAAGTTCTTCGTATTATAAATGAACCAACTG 5577318 Query 550509 CTGCTGCACTTGCATATGG 550527 |||| || | || ||||| Sbjct 5577317 CTGCATCATTGGCGTATGG 5577299 Score = 105 bits (116), Expect = 5e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || || |||||||| | || || || || |||||||| ||| Sbjct 41235882 ACCGTTCCTGCCTACTTCAACGACTCACAGAGGCAGGCCACCAAGGATGCTGGGGTGATT 41235823 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||||||||| ||||| ||||| |||||||| || ||||||||||| |||| ||||| Sbjct 41235822 GCTGGACTTAACGTTCTGCGTATCATCAATGAGCCAACTGCTGCTGCTATTGCCTATGGT 41235763 Query 550529 CTTGATAA 550536 ||||| || Sbjct 41235762 CTTGACAA 41235755 Score = 98.7 bits (108), Expect = 8e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || || || || || || || |||||||||||| | || || ||||||||| Sbjct 21470824 GCAGTGATCACAGTTCCTGCTTACTTCAATGACTCACAAAGGACGGCAACAAAAGATGCT 21470765 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| || | ||||| |||||||| ||||| ||||| || || | || Sbjct 21470764 GGCCGAATTGCTGGGCTGGAGGTTCTGCGTATTATAAATGAGCCTACAGCGGCATCGCTA 21470705 Query 550520 GCATATGGACTTGATAA 550536 |||||||| |||| || Sbjct 21470704 GCATATGGTTTTGAGAA 21470688 >seq2 Length=49199997 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| |||||||| || ||||| | || ||||| || || |||||||| Sbjct 32025693 GCAGTGATCACTGTTCCAGCATACTTCAATGATGCTCAGCGTCAGGCCACAAAAGATGCA 32025752 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| | ||| | || ||||||||||| || || ||||| || Sbjct 32025753 GGCCGAATTGCTGGCCTTGAGGTTGAAAGAATCATCAATGAACCGACAGCAGCTGCTCTG 32025812 Query 550520 GCATATGGA 550528 | |||||| Sbjct 32025813 TCCTATGGA 32025821 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||||||||| | || || || ||||| || |||||| Sbjct 35806645 GCTGTTATTACTGTCCCAGCCTATTTTAATGATGCTCAGCGCCAGGCTACCAAGGATGCT 35806586 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||||||||| | || | | |||||||| || || || ||||| || || Sbjct 35806585 GGTAGGATTGCTGGACTGGAGGTGATGAGGATTATCAACGAGCCCACGGCTGCAGCTCTG 35806526 Query 550520 GCATATGGA 550528 |||||||| Sbjct 35806525 TCATATGGA 35806517 >seq8 Length=40689132 Score = 91.5 bits (100), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 390803 CAGTATTAATACCATTATCACCATATACACATTGAATTA-ATTTGTCATTGGCATTTCTT 390861 ||| || || |||| || ||||||| | ||||| | || | || || |||||| Sbjct 26226750 CAGCATCCATGCCATCTTCCCCATATAGGAACTGAATGACATCTCCCAA-GGAATTTCTA 26226808 Query 390862 ACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATA 390921 |||||||||||||| | ||| | ||||| || | |||||| | | | ||||||| Sbjct 26226809 ACGGTACCATCATATTTTACCATGATGTCCTCCATAGCTTTAACAAGCCTGCGTTGGATA 26226868 Query 390922 TAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACT 390981 || ||||| || | ||| || | || |||| ||| | ||||||||| || | ||| | Sbjct 26226869 TACCCAGTCTCAGAAGTCTTCACAGCCGTATCAATCAGACCTTCTCTACCACCTATAGCG 26226928 Query 390982 TGGAAGAAAAATTC 390995 || ||||||||||| Sbjct 26226929 TGAAAGAAAAATTC 26226942 >seq6 Length=36014550 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 390856 TTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTT 390915 |||||||| ||||||||||| | ||| | ||||| || | ||| || | | | | Sbjct 4701833 TTTCTTACAGTACCATCATATTTTACCATGATGTCCTCCATAGCTTTCACAAGTCTCCGC 4701774 Query 390916 TGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCC 390975 |||||||| ||||| || | ||| || | || |||| ||||| ||||||||| || || Sbjct 4701773 TGGATATACCCAGTTTCAGAAGTCTTGACAGCTGTATCAATAAGACCTTCTCTACCACCC 4701714 Query 390976 ATAACTTGGAAGAAAAATTC 390995 ||| | || ||||| ||||| Sbjct 4701713 ATAGCATGAAAGAAGAATTC 4701694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029278177920130