Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq337 511 1e-140 seq14 511 1e-140 seq7 215 2e-51 >seq337 Length=135516 Score = 511 bits (566), Expect = 1e-140 Identities = 700/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 1617 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 1558 Query 25871 TGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGAT 25930 |||| | | || ||| | ||||| | ||||||||||| || || || |||||| Sbjct 1557 ACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGAT 1498 Query 25931 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCA 25990 || ||||| || |||||||| ||||| || || ||| | || ||||||||||| || || Sbjct 1497 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATTTCT 1438 Query 25991 GGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCT 26050 || || | | || | ||| || |||||| | ||||||||||| || ||||||||| Sbjct 1437 GGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 1378 Query 26051 GGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTC 26110 | | | || || ||| ||||||||||||| || ||| | || ||| | | |||||| Sbjct 1377 GCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 1318 Query 26111 TTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATG 26170 ||| | || ||||| ||| || | |||||||||| || | | || || ||| Sbjct 1317 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1258 Query 26171 AGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTA 26230 | || ||||| |||||||||| |||| || | | || ||| || || ||||| Sbjct 1257 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 1198 Query 26231 GTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACT 26290 |||||||| | || ||||| ||||| |||||| |||||| | || || ||||||||| Sbjct 1197 ATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 1138 Query 26291 TTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATG 26350 || ||||||||| | |||||||| || || || || || || ||||| ||||| || ||| Sbjct 1137 TTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATTTCACATG 1078 Query 26351 GCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTT 26410 ||||| ||||| || ||||| || | || ||| ||||||||| || ||||| Sbjct 1077 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 1018 Query 26411 ACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTT 26470 || || | || ||||| || || | | || ||| | || || || ||| Sbjct 1017 ACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTT 958 Query 26471 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATT 26530 || ||||| |||||||| ||||| ||||| ||||| ||||| || ||||| ||||||| Sbjct 957 GGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATC 898 Query 26531 TTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCG 26590 || || ||||| ||||| || ||| |||||| | || ||||| | ||| ||||||| Sbjct 897 TTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCT 838 Query 26591 GTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGT 26650 || || || || ||| | || || | ||||| | || |||||||| ||||||||||| Sbjct 837 GTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGA 778 Query 26651 TTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGA 26709 || || || ||||| || ||||| ||| || || | | || || ||| |||||||| Sbjct 777 TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTA-ATACTTGGGCTGA 719 Query 26710 TGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTT 26769 | | | ||||| ||||| || || | ||||| |||||||| ||||||||||| ||||| Sbjct 718 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 659 Query 26770 TCCACTTGACTTAGC 26784 || || ||| |||| Sbjct 658 CCCTCTAGACCTAGC 644 >seq14 Length=147140 Score = 511 bits (566), Expect = 1e-140 Identities = 700/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 81962 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 81903 Query 25871 TGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGAT 25930 |||| | | || ||| | ||||| | ||||||||||| || || || |||||| Sbjct 81902 ACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGAT 81843 Query 25931 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCA 25990 || ||||| || |||||||| ||||| || || ||| | || ||||||||||| || || Sbjct 81842 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATTTCT 81783 Query 25991 GGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCT 26050 || || | | || | ||| || |||||| | ||||||||||| || ||||||||| Sbjct 81782 GGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 81723 Query 26051 GGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTC 26110 | | | || || ||| ||||||||||||| || ||| | || ||| | | |||||| Sbjct 81722 GCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 81663 Query 26111 TTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATG 26170 ||| | || ||||| ||| || | |||||||||| || | | || || ||| Sbjct 81662 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 81603 Query 26171 AGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTA 26230 | || ||||| |||||||||| |||| || | | || ||| || || ||||| Sbjct 81602 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 81543 Query 26231 GTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACT 26290 |||||||| | || ||||| ||||| |||||| |||||| | || || ||||||||| Sbjct 81542 ATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 81483 Query 26291 TTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATG 26350 || ||||||||| | |||||||| || || || || || || ||||| ||||| || ||| Sbjct 81482 TTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATTTCACATG 81423 Query 26351 GCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTT 26410 ||||| ||||| || ||||| || | || ||| ||||||||| || ||||| Sbjct 81422 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 81363 Query 26411 ACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTT 26470 || || | || ||||| || || | | || ||| | || || || ||| Sbjct 81362 ACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTT 81303 Query 26471 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATT 26530 || ||||| |||||||| ||||| ||||| ||||| ||||| || ||||| ||||||| Sbjct 81302 GGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATC 81243 Query 26531 TTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCG 26590 || || ||||| ||||| || ||| |||||| | || ||||| | ||| ||||||| Sbjct 81242 TTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCT 81183 Query 26591 GTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGT 26650 || || || || ||| | || || | ||||| | || |||||||| ||||||||||| Sbjct 81182 GTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGA 81123 Query 26651 TTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGA 26709 || || || ||||| || ||||| ||| || || | | || || ||| |||||||| Sbjct 81122 TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTA-ATACTTGGGCTGA 81064 Query 26710 TGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTT 26769 | | | ||||| ||||| || || | ||||| |||||||| ||||||||||| ||||| Sbjct 81063 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 81004 Query 26770 TCCACTTGACTTAGC 26784 || || ||| |||| Sbjct 81003 CCCTCTAGACCTAGC 80989 >seq7 Length=35964315 Score = 215 bits (238), Expect = 2e-51 Identities = 321/453 (71%), Gaps = 2/453 (0%) Strand=Plus/Plus Query 26333 ATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCT 26392 ||||| ||||| || ||| ||||| ||||| || ||||| || | || ||| |||| Sbjct 24459263 ATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCT 24459322 Query 26393 ATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAG 26452 ||||| || ||||| || | | || ||||| || || | | || Sbjct 24459323 ATGCATGGTTCCTTGGTAACCTATAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCT 24459382 Query 26453 AATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGG 26512 ||| | || || || ||||| ||||| |||| || ||||| ||||| ||||| || || Sbjct 24459383 AATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTGCTCATGGT 24459442 Query 26513 TACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTC 26572 || ||||| ||||||| || || ||||| ||||| || ||| ||||| | || ||| Sbjct 24459443 TATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTTTACACTTC 24459502 Query 26573 TTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATG 26632 || | ||| ||||||| || || || || ||| | || || | ||||| | || ||| Sbjct 24459503 TTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATG 24459562 Query 26633 GCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGAT 26691 ||||| |||||||||||||| || || ||||| || ||||| ||| || || | | | Sbjct 24459563 GCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTT 24459622 Query 26692 AATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGA 26751 | || ||| ||||||||| | ||||| ||||| || || | ||||| |||||||| Sbjct 24459623 ATTA-ATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGA 24459681 Query 26752 GCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| ||||| || || ||| |||| Sbjct 24459682 ACGTAATGCTCACAACTTCCCTCTAGACCTAGC 24459714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146725812819288