Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4 125 6e-24 seq1 114 1e-20 seq2 91.5 1e-13 >seq4 Length=40407879 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || ||||| || || ||||||||||| || | || | | |||| || | ||| Sbjct 38277322 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAGGTACGGCCATCCTCAAGCTGC 38277263 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| ||||| || || || || |||||||| || || ||||| || Sbjct 38277262 TTGCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTC 38277203 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||| | || |||||||| |||| || ||||| ||| Sbjct 38277202 GCCTTGACATTGTCGATTGTGTCAGAGGACTCGACTTCAAGGGTGATAGTCTTGCCAGTT 38277143 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| || |||||| Sbjct 38277142 AAGGTCTTGACAAAGATTTGCATG 38277119 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || || || ||||| | ||| | | |||| ||| Sbjct 38277556 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCAAGAGTCCGGCCATCCTCC 38277497 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | ||||| || || || ||||||||||| ||||||||| Sbjct 38277496 AGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGA 38277437 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || || | || | ||||| || | || |||||||| |||| || || Sbjct 38277436 ATCTTTGCCTTCACGTTATCAATTGTGTCGGAAGACTCAACTTCAAGCGTGATGGTCTTT 38277377 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||| ||||||||| Sbjct 38277376 CCAGTCAAGGTCTTCACAAAGATCTGCATG 38277347 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || ||||| ||||| || || | || | | |||| || | ||| Sbjct 37851846 TGGAGAGTGGACTCCTTCTGTATGTTGTAGTCAGCAAGGGTACGGCCATCCTCAAGCTGC 37851905 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || || || |||||||| || || || || || || Sbjct 37851906 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 37851965 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||||||| || || || ||||||| || |||||||| Sbjct 37851966 GCCTTCACGTTGTCAATGGTGTCAGACGACTCAACCTCCAGAGTGATGGTCTTGCCGGTG 37852025 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 37852026 AGGGTCTTCACAAATATCTGCAT 37852048 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||||||||| || || || || || ||||| || || | ||||| |||| ||| Sbjct 31506259 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCTAACGTTCTCCCATCTTCC 31506200 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 31506199 AATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 31506140 Query 101381 A 101381 | Sbjct 31506139 A 31506139 >seq1 Length=42145699 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| || || || |||||||||||||| | || | | |||| |||| ||| Sbjct 7656322 TGGAGAGTAGACTCCTTCTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTCCAGCTGC 7656263 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| |||||| || || || || ||||| || || || || || || Sbjct 7656262 TTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 7656203 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||| | || || || ||||||| || ||||| || Sbjct 7656202 GCCTTAACATTGTCAATGGTGTCAGAACTCTCAACCTCCAGAGTGATGGTCTTGCCAGTC 7656143 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 7656142 AAGGTCTTCACGAAAATCTGCAT 7656120 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | || | || || ||||| ||||| ||||| || |||||||||||||| Sbjct 35309467 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCGGCC 35309526 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || |||| ||||| || ||||| || | ||||| || || || || Sbjct 35309527 AATGTGCGCCCGTCCTCCAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCCGGTGGG 35309586 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || ||| || ||| | || | |||||||| | || ||| Sbjct 35309587 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCAATTGTGTCAGAGCTCTCGACT 35309646 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || || | || || ||||| |||||||| Sbjct 35309647 TCCAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 35309693 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || |||||||| || || | || | | |||| |||| |||| Sbjct 7135609 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGTTGC 7135550 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| || || || || || || || || || || || || Sbjct 7135549 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 7135490 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || | ||||| || |||||||| Sbjct 7135489 GCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTC 7135430 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||||||||| Sbjct 7135429 AAAGTCTTCACGAATATCTGCAT 7135407 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||| | || | || || ||||| ||||| || || || |||||||| || | Sbjct 35309693 TTCCTCCTCGAAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCTG 35309752 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | | |||| || | ||||| || ||||| || | | ||| || || || | Sbjct 35309753 CCAGCGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGTG 35309812 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || || || ||||| ||| || ||| | || | ||||| || | || | Sbjct 35309813 GGATTCCCTCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAA 35309872 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | |||||||| | ||| || || || | || || ||||||||||||||| Sbjct 35309873 CCTCAAGAGTTATCGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCATG 35309922 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || || ||||| || | || | | |||| |||| ||| Sbjct 7122917 TGGAGGGTGGACTCCTTCTGGATGTTATAATCCGCAAGGGTGCGGCCATCCTCCAGCTGC 7122858 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | |||||| || || || |||||||| || || || || || || Sbjct 7122857 TTGCCAGCAAAGATTAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 7122798 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || | ||||| || |||||||| Sbjct 7122797 GCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTC 7122738 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || ||||||||||| Sbjct 7122737 AATGTCTTCACGAATATCTGCAT 7122715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | || ||||| || || || ||||||||||| || Sbjct 7122485 CCTCCCCTGAGACGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCAGCA 7122426 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || ||||| |||| |||||| || || || || Sbjct 7122425 AGTGTGCGCCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGG 7122366 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || || | || | |||||||| | ||||| Sbjct 7122365 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 7122306 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| |||| || ||||| || | || || || || ||||||||| Sbjct 7122305 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 7122258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| || || || ||||||||||| || Sbjct 7122713 CCACCCCTCAGACGGAGCACCAGATGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGCA 7122654 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| || | |||||| || || || || Sbjct 7122653 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGG 7122594 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || || | || | ||||| || | ||||| Sbjct 7122593 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 7122534 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| |||| || ||||| || | || || || || ||||||||| Sbjct 7122533 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 7122486 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| || || || ||||||||||| || Sbjct 7135405 CCACCCCTCAGACGGAGCACCAGATGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGCA 7135346 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| || | |||||| || || || || Sbjct 7135345 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGGG 7135286 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || || | || | |||||||| | ||||| Sbjct 7135285 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 7135226 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || || || ||||||||| Sbjct 7135225 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 7135178 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | || ||||| || || || || ||||| || || Sbjct 7134265 CCTCCCCTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 7134206 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || ||||| || | ||||| ||||| || ||| Sbjct 7134205 AGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGATCCGGGGGA 7134146 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || || || | || | |||||||| | ||||| Sbjct 7134145 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCACC 7134086 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | || || ||||| |||||||| Sbjct 7134085 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 7134039 >seq2 Length=49199997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || |||| ||| | | |||| || | ||| Sbjct 10739594 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGC 10739535 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || || || ||||||||||| || || || || || Sbjct 10739534 TTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTA 10739475 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || || |||| || |||||||| Sbjct 10739474 GCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 10739415 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 10739414 AGGGTCTTAACAAAGATCTGCAT 10739392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276772410309