Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq337 621 4e-173 seq14 621 4e-173 seq7 338 7e-88 >seq337 Length=135516 Score = 621 bits (688), Expect = 4e-173 Identities = 711/953 (75%), Gaps = 12/953 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCA 162595 |||| ||||||||||| |||||||||||| ||| | | ||||||| | || | Sbjct 1586 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATT---GACCGCAACTTCCGTATTTA 1530 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 | || || ||||| || || |||||||| ||||| |||||||| | || |||||| | | Sbjct 1529 TTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTG 1470 Query 162656 GTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTA 162715 |||| | || ||||| ||||| || || ||||||||| | |||||| ||| || | Sbjct 1469 GTTCTTTACTTTATGGAAACAATATTATTTCTGGTGCTATTATTCCTACTTCTGCGGCGA 1410 Query 162716 TTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATG 162775 | || | || || || || || |||||||| ||| || ||||||| ||||| || |||| Sbjct 1409 TCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATG 1350 Query 162776 GTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---G 162832 | || |||| | || | || | |||||| | | || | ||| | | | | Sbjct 1349 GCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGG 1293 Query 162833 GTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACT 162892 ||||| ||||||||||| || ||| | |||||||| |||||||| ||||||||| | Sbjct 1292 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATT 1233 Query 162893 CTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTT 162952 | || || || | || || ||||| |||||| | |||||| | |||||||| || Sbjct 1232 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTT 1173 Query 162953 TCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAG 163012 ||||||| | |||||| | || || ||||||||||| |||| ||| | || ||||| | Sbjct 1172 TCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGG 1113 Query 163013 CAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTG 163072 | |||||||||||||| ||||| || || || ||| | || || || ||||||||||| | Sbjct 1112 CGGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 1053 Query 163073 GTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTA 163132 |||| || || ||||||||||| ||||| | || || ||| | | ||||| ||||| | Sbjct 1052 GTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCA 993 Query 163133 CTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACA 163192 |||| | ||||| || | ||||| || || || ||||||||||||||||| |||| Sbjct 992 CTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGAGACTTATAACA 933 Query 163193 TTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACT 163252 |||| |||||||| || || |||||||| || |||||||| ||||| ||||||||||| Sbjct 932 TTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACT 873 Query 163253 CACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAA 163312 | ||||| | ||||||||| | ||||| | ||||| || | |||||||||||||| Sbjct 872 CTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTT 813 Query 163313 TGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTG 163372 | ||| | ||||||||||||||||| || || ||||| ||||||||||| || |||| Sbjct 812 TAGGTATTAGTACTATGGCATTCAACCTAAATGGATTCAATTTCAACCAATCTGTAGTTG 753 Query 163373 ACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432 | ||| || ||| ||||||||| |||||| | ||| | || ||||||| Sbjct 752 ATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 693 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 692 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 640 >seq14 Length=147140 Score = 621 bits (688), Expect = 4e-173 Identities = 711/953 (75%), Gaps = 12/953 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCA 162595 |||| ||||||||||| |||||||||||| ||| | | ||||||| | || | Sbjct 81931 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATT---GACCGCAACTTCCGTATTTA 81875 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 | || || ||||| || || |||||||| ||||| |||||||| | || |||||| | | Sbjct 81874 TTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTG 81815 Query 162656 GTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTA 162715 |||| | || ||||| ||||| || || ||||||||| | |||||| ||| || | Sbjct 81814 GTTCTTTACTTTATGGAAACAATATTATTTCTGGTGCTATTATTCCTACTTCTGCGGCGA 81755 Query 162716 TTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATG 162775 | || | || || || || || |||||||| ||| || ||||||| ||||| || |||| Sbjct 81754 TCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATG 81695 Query 162776 GTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---G 162832 | || |||| | || | || | |||||| | | || | ||| | | | | Sbjct 81694 GCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGG 81638 Query 162833 GTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACT 162892 ||||| ||||||||||| || ||| | |||||||| |||||||| ||||||||| | Sbjct 81637 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATT 81578 Query 162893 CTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTT 162952 | || || || | || || ||||| |||||| | |||||| | |||||||| || Sbjct 81577 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTT 81518 Query 162953 TCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAG 163012 ||||||| | |||||| | || || ||||||||||| |||| ||| | || ||||| | Sbjct 81517 TCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGG 81458 Query 163013 CAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTG 163072 | |||||||||||||| ||||| || || || ||| | || || || ||||||||||| | Sbjct 81457 CGGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 81398 Query 163073 GTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTA 163132 |||| || || ||||||||||| ||||| | || || ||| | | ||||| ||||| | Sbjct 81397 GTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCA 81338 Query 163133 CTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACA 163192 |||| | ||||| || | ||||| || || || ||||||||||||||||| |||| Sbjct 81337 CTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGAGACTTATAACA 81278 Query 163193 TTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACT 163252 |||| |||||||| || || |||||||| || |||||||| ||||| ||||||||||| Sbjct 81277 TTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACT 81218 Query 163253 CACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAA 163312 | ||||| | ||||||||| | ||||| | ||||| || | |||||||||||||| Sbjct 81217 CTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTT 81158 Query 163313 TGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTG 163372 | ||| | ||||||||||||||||| || || ||||| ||||||||||| || |||| Sbjct 81157 TAGGTATTAGTACTATGGCATTCAACCTAAATGGATTCAATTTCAACCAATCTGTAGTTG 81098 Query 163373 ACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432 | ||| || ||| ||||||||| |||||| | ||| | || ||||||| Sbjct 81097 ATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 81038 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 81037 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 80985 >seq7 Length=35964315 Score = 338 bits (374), Expect = 7e-88 Identities = 351/460 (76%), Gaps = 0/460 (0%) Strand=Plus/Plus Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083 ||| | ||||| || || || ||| | || || || ||||||||||| ||||| || || Sbjct 24459257 ATCATTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTC 24459316 Query 163084 AGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAG 163143 ||||||||||| ||||| | || || | | | | ||||| ||||| ||||| | ||| Sbjct 24459317 AGTGCTATGCATGGTTCCTTGGTAACCTATAGTTTGATCAGGGAAACCACTGAAAATGAG 24459376 Query 163144 TCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCT 163203 || || | ||||| || || || |||||||||| || ||| |||||||| |||||| Sbjct 24459377 TCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTGCT 24459436 Query 163204 CATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTT 163263 ||||| || |||||||| || |||||||| ||||| |||||||||||| |||| | Sbjct 24459437 CATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTTTA 24459496 Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323 ||||||||| | ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 24459497 CACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGT 24459556 Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGT 163383 ||||||||||||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 24459557 ACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 24459616 Query 163384 AAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATG 163443 || ||| ||||||||| |||||| ||| | || |||||||||||||| ||| Sbjct 24459617 CGCGTTATTAATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTAATG 24459676 Query 163444 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTG 163483 ||||| |||||||||||||||||||| || ||||| |||| Sbjct 24459677 CACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 24459716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553082470130280