Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 271 1e-67 seq7 217 3e-51 >seq4 Length=40407879 Score = 271 bits (300), Expect = 1e-67 Identities = 584/863 (68%), Gaps = 25/863 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||||||||| |||| || ||||||| ||| Sbjct 10865799 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTC 10865858 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA---G 47955 ||| || |||||||||| | ||| |||| | || || | | ||| | Sbjct 10865859 CATCCAGTCAAAGGGGTTGGCGGCGTTGTACATCT---TCTTGCACCCGAGAGCCATGAG 10865915 Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 |||| | || |||||| |||||||||| | ||| || | | ||||||||| | ||| Sbjct 10865916 CAGGCGGTCTGCGACGAACTCGATGTACTGGCTCATTAGCGCGCCGTTCATGCCGACGAG 10865975 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||||| | || | || |||||| ||| || | ||||| || | || || Sbjct 10865976 CGCGACGGGGAGCGCGTCGCAGACAAACTCTCGCTCGATGTCGACGGCGTCGGCGACGAT 10866035 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || ||||||| ||| | | ||| |||| ||| | | | ||||| | ||| || Sbjct 10866036 CTCGCGGACGCGGGGCTCGTCGAGCTTGCTGCGGAGGAGGTCG---TAGAGGAGGCACGC 10866092 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || || Sbjct 10866093 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 10866152 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| ||||| || ||||||||||| || || ||| ||||| ||||||||||| || Sbjct 10866153 CATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATTCC 10866212 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCC 48314 ||| || ||||||||| ||| || ||| | |||||| | | | | |||| Sbjct 10866213 CTCGACGCAGGCGAACGCGACGAG--TCGCTCGG--CGAAGCGCTCCCCGCCGTCAATCC 10866268 Query 48315 AGGAAAGCGCCCAGTCTGCCTT-CTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || | |||||||| ||||| | | | | | || | || || ||||| |||||| Sbjct 10866269 AGCGCATGGCCCAGTCGGCCTTGCGGCGT-ACGGCGGGGACGGTGTCGATGGCGCGGAAG 10866327 Query 48374 A---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 | | | ||| ||| | |||| | ||||| ||||||| | ||||||| Sbjct 10866328 AGGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATC 10866384 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || ||||||||||| ||||||||||| | |||||| ||| Sbjct 10866385 TCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACC 10866444 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 ||||| || | ||| | | || ||||| || || || || || || || Sbjct 10866445 TGCACGTCGGACATGAAGCGGGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCG 10866504 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG---CATTCCAG 48607 |||||||| || || || | ||| |||||||||| | ||| ||| | | | |||| Sbjct 10866505 AAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGAGAGCGCCTCGTCCCAG 10866564 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 | |||| | |||||||| || || | |||||||||||||| | || || Sbjct 10866565 TGGCGCGCGTCGGCGGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTC 10866624 Query 48668 TTGTACATGCCCCATATGTCCGG 48690 ||||| | |||| || | ||| Sbjct 10866625 TTGTAGAACTCCCAGATCTGCGG 10866647 >seq7 Length=35964315 Score = 217 bits (240), Expect = 3e-51 Identities = 507/758 (67%), Gaps = 24/758 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 23911457 CTGGTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 23911516 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | || | |||| | ||| Sbjct 23911517 CATCCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTGGT--GCCCCAGCGCCATGAGC 23911574 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | |||||| || | ||| Sbjct 23911575 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATTCCGACGAGC 23911634 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || ||||| ||| || | ||||| || | || ||| Sbjct 23911635 GCGACGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATC 23911694 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | |||||| ||| | | ||| |||| ||| | | | ||||| | |||||| Sbjct 23911695 TCGCGGACGCGGCCCTCGTCGAGCTTGCTGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 23911751 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 23911752 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 23911811 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 23911812 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 23911871 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCA 48315 || || ||||| ||| ||| | ||| | |||||| | | | | |||||| Sbjct 23911872 TCAACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCA 23911927 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | |||||||| ||||| | ||| ||| | || || ||||| |||| Sbjct 23911928 GCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGA 23911983 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 |||| | | ||| | |||| | ||||| ||| ||| | |||||||| Sbjct 23911984 AGAGGTGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGAAGCAGCGAGTACATCT 23912043 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| ||||||||||| | ||||| |||| Sbjct 23912044 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCGACCT 23912103 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGA--TTCTCATTGACTATCCCATCTGAAGCAGC 48549 | || || | ||| | || ||| ||||| || || || || || || || Sbjct 23912104 GGACGTCGGACATGAA--GCGGGAGGAGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGC 23912161 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGT 48587 |||||||| || || || | ||| |||||||||| Sbjct 23912162 GAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGT 23912199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528875918080