Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7 181 2e-40 seq4 167 4e-36 >seq7 Length=35964315 Score = 181 bits (200), Expect = 2e-40 Identities = 488/738 (66%), Gaps = 28/738 (4%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| || || || ||| |||||| || | | | | Sbjct 23912178 ACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCTCCTCCCGCT 23912119 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || || ||| || ||||| |||||||| |||||||| ||||||| Sbjct 23912118 TCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCG 23912059 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 | || | ||||| ||| |||| | |||||| ||| ||||| |||| ||||| Sbjct 23912058 AGAACATCCACTCGGAGATGTACTCGCTGCTTCTCGAGACCTACATCCGCGACGGCGCCG 23911999 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 ||| || | || || | |||||||| | | ||| | | | ||||| | Sbjct 23911998 AGAAGGACCACCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACT 23911939 Query 25835 GGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||||| |||||| || || | |||||| || |||||| || || ||||| Sbjct 23911938 GGGCCATGCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCCTCGTCGCCTTC 23911883 Query 25894 GC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 || ||| || ||||||||||| ||| || || || |||| ||||||||||||||||| Sbjct 23911882 GCCTGC-GTTGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGA 23911825 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || || ||| ||||||||||||||| | | |||||||| | Sbjct 23911824 AGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 23911765 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTCTCA 26069 ||||| | || || |||||||| ||||| | || | |||| || || || | Sbjct 23911764 TCCACTGCGACTTCGCCTGCCTCCTCTA------CGACCTCCTCCGCAGCAAGCTCGACG 23911711 Query 26070 AGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || | | |||| | ||| || || || || || |||||| ||||| Sbjct 23911710 AGGGCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCG 23911651 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | || |||||| | | ||||||||||| ||||| |||| Sbjct 23911650 ACGCGCTCCCCGTCGCGCTCGTCGGAATGAACGGCGGGCTCATGAGCCAGTACATCGAGT 23911591 Query 26189 ATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACGCC 26243 || ||||||| ||||| || | |||||| | ||||| | |||| || |||| Sbjct 23911590 TCGTCGCCGACCGCCTGCTCATGGC-GCTGGG--GCACCAGAAGATGTACAACGT-CGCC 23911535 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 ||||| ||||||| ||||| ||| ||| || | || |||||||||||||| || || Sbjct 23911534 -AACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAA 23911476 Query 26304 GAGGGTCGGCGACTATCA 26321 | | ||||| || || || Sbjct 23911475 GCGCGTCGGGGAGTACCA 23911458 >seq4 Length=40407879 Score = 167 bits (184), Expect = 4e-36 Identities = 388/572 (68%), Gaps = 16/572 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| ||||| ||| | || || Sbjct 10866641 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTC 10866582 Query 25537 GCCAAGGACATGGACGGCTGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| ||| | || ||| ||||||| || || || Sbjct 10866581 TCCGCCGACGCGCGCCACTGGGACGAGGCGCTCTCCCCCGACGAGCGCCACTTCATCTCC 10866522 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA-G 25652 ||||| | || ||||| || ||||| || || || ||| |||||| || ||| | Sbjct 10866521 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTC-GCGTCCCG 10866463 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || |||||| || |||||| |||||||| |||||||| ||||| Sbjct 10866462 CTTCATGTCCGACGTGCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCAT 10866403 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 ||| || | ||||| ||| |||| | ||| || ||| ||||| |||| ||| Sbjct 10866402 CGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGC 10866343 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG-AAGGCGC 25831 ||||| || || || || | |||||||| ||| ||| || | | | ||||| Sbjct 10866342 CGAGAAGGACCGCCTCTTCCGCGCCATCGA-CACCGTCCCCGCCGTACGCCGCAAGGCCG 10866284 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||||||| ||||| || || | |||||| || |||||| || || || Sbjct 10866283 ACTGGGCCATGCGCTGGATTGACGGCGGGGAGCGCTTCGC----CGAGCGACTCGTCGCG 10866228 Query 25891 TTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 || || ||| || ||||| ||||| ||| || || || |||| ||||||||||||||| Sbjct 10866227 TTCGCCTGC-GTCGAGGGAATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCA 10866170 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || |||| |||||| || || ||| ||||||||||||||| | | ||||||| Sbjct 10866169 AGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGG 10866110 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | || ||| | || || || ||||| |||||| Sbjct 10866109 GCCTGCACTGCGACTTCGCGTGCCTCCTCTAC 10866078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840887241280