Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9 113 3e-19 seq2 105 4e-17 seq3 104 2e-16 seq1 98.7 6e-15 seq6 95.1 8e-14 seq4 95.1 8e-14 seq8 89.7 3e-12 >seq9 Length=58970307 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || |||||||||| || || ||||||||||| || | || |||||||| |||| Sbjct 1845719 ATGCTGTGGTTACTGTTCCTGCTTACTTTAATGATTCCCAGAGGCAGGCAACTAAGGATG 1845660 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || || ||||| | ||||| || ||||| ||||| || || ||| Sbjct 1845659 CTGGTGTTATTGCCGGGCTCAATGTCATGCGTATCATCAATGAGCCAACTGCTGCTGCAA 1845600 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 1845599 TTGCCTATGGTCTTGACAAGAA 1845578 Score = 109 bits (120), Expect = 4e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| Sbjct 13464829 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCT 13464888 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| ||||| | || || ||||||||||||||||| || || Sbjct 13464889 GGCCGCATTGCGGGCCTTGATGTTGAGAGGATCATCAATGAACCAACAGCAGCTGCTCTG 13464948 Query 474857 GCTTATGG 474864 ||||||| Sbjct 13464949 TCTTATGG 13464956 >seq2 Length=49199997 Score = 105 bits (116), Expect = 4e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| || |||||||||||||| || |||||| |||| ||||| || || |||||||| Sbjct 32025693 GCAGTGATCACTGTTCCAGCATACTTCAATGATGCTCAGCGTCAGGCCACAAAAGATGCA 32025752 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||||||| || ||| | ||| | | || || |||||||| |||||||| || || Sbjct 32025753 GGCCGAATTGCTGGCCTTGAGGTTGAAAGAATCATCAATGAACCGACAGCAGCTGCTCTG 32025812 Query 474857 GCTTATGG 474864 | ||||| Sbjct 32025813 TCCTATGG 32025820 >seq3 Length=50651951 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||||| |||||||| || || ||||| ||| | |||||| |||||||| Sbjct 5577426 GCAGTGGTTACTGTCCCAGCATACTTCAACGATTCACAAAGGACAGCAACAAAAGATGCT 5577367 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| || | ||| | |||||||| ||||||||||| || || || | Sbjct 5577366 GGTCGTATTGCAGGGCTGGAAGTTCTTCGTATTATAAATGAACCAACTGCTGCATCATTG 5577307 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || |||||| | || ||||| Sbjct 5577306 GCGTATGGTTTCGAGAAGAA 5577287 >seq1 Length=42145699 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| || || || || || || || || | ||||||||||| ||||| | Sbjct 7655197 AGACGGAGAACCAGGTGGAGGGTGCTCTCCTTTTGGATGTTATAATCAGCGAGAGTGCGC 7655138 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||| ||||| || || || ||||| | || || || || || || || ||| Sbjct 7655137 CCATCCTCAAGCTGCTTGCCCGCGAAGATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCC 7655078 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| || ||||| |||||| ||||| || |||| | | | |||||||| Sbjct 7655077 TTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCA-CCTCAAGGGT 7655019 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || |||||||| ||||||||||| || || Sbjct 7655018 GATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTG 7654983 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| || || || || ||||| || || | ||||||||||| || || | | Sbjct 7655653 AGGCGGAGCACCAGGTGGAGGGTACTCTCCTTCTGGATGTTATAATCAGCAAGGGTACGG 7655594 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||| ||||| |||||||| ||||| | || || || || ||||| || ||| Sbjct 7655593 CCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 7655534 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| || ||||| |||||| || || || |||| | | | |||||||| Sbjct 7655533 TTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCAGAAGACTCCA-CCTCAAGGGT 7655475 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || | ||||| ||||| || || Sbjct 7655474 GATAGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 7655439 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| || || || || ||||| || || | ||||||||||| || || | | Sbjct 7655881 AGGCGGAGCACCAGGTGGAGGGTACTCTCCTTCTGGATGTTATAATCAGCAAGGGTACGG 7655822 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||| ||||| |||||||| ||||| | || || || || ||||| || ||| Sbjct 7655821 CCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 7655762 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| || ||||| |||||| || || || |||| | | | |||||||| Sbjct 7655761 TTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCAGAAGACTCCA-CCTCAAGGGT 7655703 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || | ||||| ||||| || || Sbjct 7655702 GATAGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 7655667 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||||||||| || ||| || || ||||| || || | || | Sbjct 35309248 AGACGCAGCACAAGATGAAGAGTGGATTCCTTTTGAATGTTATAGTCCGCCAATGTGCGC 35309307 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| ||||| || || || || || || || || ||| Sbjct 35309308 CCATCCTCCAGCTGCTTCCCAGCAAAGATAAGCCGCTGCTGGTCTGGTGGGATGCCCTCC 35309367 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 ||||| || ||||| || ||| ||||| || |||| | | | || |||||| || Sbjct 35309368 TTGTCCTGGATCTTGGCCTTAACATTGTCAATTGTGTCAGAGCTCTCAA-CTTCAAGTGT 35309426 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| || ||||| || Sbjct 35309427 GATGGTCTTTCCAGTGAGGGTCTTGACAAAAATCTG 35309462 Score = 95.1 bits (104), Expect = 8e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| || || || | ||||| ||| || || | ||| || || || || || Sbjct 35309701 CGAAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCTGCCAGCGTA 35309760 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| ||||| |||||||||||||| || || | || || ||||| || ||||| Sbjct 35309761 CGGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATTCCC 35309820 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAG 480730 |||||||| ||||||||| |||||| ||||| || || | | | | || ||||| Sbjct 35309821 TCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAA-CCTCAAG 35309879 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || || || Sbjct 35309880 AGTTATCGTCTTCCCAGTGAGGGTCTTCACAAATATCTG 35309918 Score = 86.0 bits (94), Expect = 4e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| || || || || || || || || | || || ||||| || || | Sbjct 7134256 AGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGC 7134197 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||| ||||| || ||||| || || || || ||||| || ||||| |||||| Sbjct 7134196 CCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCTTCC 7134137 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| || ||||| ||||| ||||| || |||| | | | || ||||| Sbjct 7134136 TTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCA-CCTCGAGGGT 7134078 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || |||||||| ||||| || || || || Sbjct 7134077 GATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTG 7134042 >seq6 Length=36014550 Score = 95.1 bits (104), Expect = 8e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 321759 GTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATTC 321818 || ||| ||||| | |||| || || |||||| | |||||| || | ||||| | Sbjct 4699901 GTGACAGTTTCAGGATATGTCAGGTTCAAAGCAATACTCCATGGTACTCCTAATTCAT-C 4699843 Query 321819 AGTGCA-ATATTTGGATCAGATGTGATAACTGTACGACCAGACATATCAACACGTTTACC 321877 | || ||||||||||| | ||||||||| ||||| | || | ||||||||| || || Sbjct 4699842 AATGTTTATATTTGGATCTGGTGTGATAACAGTACGGGCTGAGAAATCAACACGCTTTCC 4699783 Query 321878 CATAAGATTTCCTCTAATACGACCTTCTTTT 321908 ||| | ||||||||||| || ||||||||| Sbjct 4699782 CATCAAGTTTCCTCTAATGCGGCCTTCTTTT 4699752 Score = 89.7 bits (98), Expect = 3e-12 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 321759 GTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATTC 321818 || ||| ||||| | |||| || || |||||| | |||| | || | ||||| | Sbjct 4691977 GTCACAGTTTCAGGATATGTCAGGTTCAAAGCAATACTCCATGGCACTCCTAATTCAT-C 4691919 Query 321819 AGTGCA-ATATTTGGATCAGATGTGATAACTGTACGACCAGACATATCAACACGTTTACC 321877 | || ||||||||||| | ||||||||| ||||| | || | ||||||||| || || Sbjct 4691918 AATGTTTATATTTGGATCTGGTGTGATAACAGTACGGGCTGAGAAATCAACACGCTTTCC 4691859 Query 321878 CATAAGATTTCCTCTAATACGACCTTCTTTT 321908 ||| | ||||||||||| || ||||||||| Sbjct 4691858 CATCAAGTTTCCTCTAATGCGGCCTTCTTTT 4691828 >seq4 Length=40407879 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || || || ||||| ||| || || || ||| || ||||| | || | | Sbjct 38277109 AGGCGAAGGACGAGGTGAAGAGTAGACTCCTTCTGAATATTGTAGTCAGCCAAGGTACGG 38277050 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||| ||||| |||||||| || | || || || || ||||| || |||||| Sbjct 38277049 CCATCCTCAAGCTGCTTCCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATACCTTCC 38276990 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| |||||||| |||||| ||||| || |||| | ||||| ||| Sbjct 38276989 TTGTCCTGAATCTTCGCCTTGACATTGTCAATCGTGTCAGAGGACTCGACCTCAAGAGTA 38276930 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || ||||| ||||| || || || || Sbjct 38276929 ATAGTCTTGCCAGTGAGGGTCTTGACAAAGATCTG 38276895 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| || || || || || ||| || || ||| |||||||| | || | | Sbjct 38277337 AGGCGGAGGACGAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAGGTACGG 38277278 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||| ||||| |||||||| || | || || || || ||||| || |||||| Sbjct 38277277 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCCGGAGGGATGCCTTCC 38277218 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| |||||||| |||||| || || || |||| | ||||||||| Sbjct 38277217 TTGTCCTGAATCTTCGCCTTGACATTGTCGATTGTGTCAGAGGACTCGACTTCAAGGGTG 38277158 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || | ||||| || || ||||| Sbjct 38277157 ATAGTCTTGCCAGTTAAGGTCTTGACAAAGATTTG 38277123 >seq8 Length=40689132 Score = 89.7 bits (98), Expect = 3e-12 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 ||||| |||| | || ||| |||| | |||| || || |||||| | |||| Sbjct 26228727 TCAATGTTATATGGAGTGACAGTTTCTGGATATGTCAGGTTCAAAGCAATACTCCATGGC 26228786 Query 321804 AAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862 | ||| | ||||| || || |||||||||||| | ||||||||| || || | || | Sbjct 26228787 ACACCTAATTCAT-CAATGTTAATATTTGGATCTGGTGTGATAACAGTGCGGGCTGAGAA 26228845 Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908 |||||| || || ||||| | ||||||||||| || ||||||||| Sbjct 26228846 ATCAACTCGCTTCCCCATCAAATTTCCTCTAACCCGGCCTTCTTTT 26228891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268164744434876