Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq337 565 7e-157 seq14 565 7e-157 seq7 232 2e-56 >seq337 Length=135516 Score = 565 bits (626), Expect = 7e-157 Identities = 723/985 (73%), Gaps = 16/985 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 643 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 702 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 703 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA-- 760 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||||||||| || || || |||||||| || || | || || Sbjct 761 -GATTGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 819 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 820 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 879 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || || ||||| || ||||| ||||| Sbjct 880 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 939 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||||||||| |||||||| || || | || ||||||| ||||| ||||| Sbjct 940 AGTCTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTC 999 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 1000 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 1056 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || ||||| | ||| || || |||||||||||||| ||||| || || || Sbjct 1057 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCTG 1116 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || | ||||||||||||||||||||| Sbjct 1117 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 1176 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAA 18425 ||||| |||| |||||||| | ||||| || | || | |||||||| || || || ||| Sbjct 1177 TCCTTGACCAATAGGATAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAA 1234 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 || |||||| |||||| ||||||||||| || | ||||||||||||| | || ||| Sbjct 1235 TATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 1294 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 || ||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 1295 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 1354 Query 18546 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 18605 |||||||| || || | | |||||||||||| |||||||| || || | ||||| || Sbjct 1355 TATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCC 1414 Query 18606 TTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAG 18665 ||| | || | || || || || || || ||||||||||| ||||| | || || Sbjct 1415 GCAGAAGTAGGAATAATAGCACCAGAAATAATATTGTTTCCATAAAGTAAAGAACCAGAA 1474 Query 18666 ACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 |||||||||||||||||||| || || || ||||||||||| | || || || | |||| Sbjct 1475 ACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAAT 1534 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | | || |||||| || | | ||||||||| | || || ||||| || | ||| || Sbjct 1535 ACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGA 1594 Query 18786 CGGTTGTTTGTACTCGTAACCCAGT 18810 ||||| | || || || | ||||| Sbjct 1595 CGGTTTTCGGTGCTAGTTATCCAGT 1619 >seq14 Length=147140 Score = 565 bits (626), Expect = 7e-157 Identities = 723/985 (73%), Gaps = 16/985 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 80988 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 81047 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 81048 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA-- 81105 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||||||||| || || || |||||||| || || | || || Sbjct 81106 -GATTGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 81164 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 81165 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 81224 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || || ||||| || ||||| ||||| Sbjct 81225 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 81284 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||||||||| |||||||| || || | || ||||||| ||||| ||||| Sbjct 81285 AGTCTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTC 81344 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 81345 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 81401 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || ||||| | ||| || || |||||||||||||| ||||| || || || Sbjct 81402 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCTG 81461 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || | ||||||||||||||||||||| Sbjct 81462 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 81521 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAA 18425 ||||| |||| |||||||| | ||||| || | || | |||||||| || || || ||| Sbjct 81522 TCCTTGACCAATAGGATAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAA 81579 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 || |||||| |||||| ||||||||||| || | ||||||||||||| | || ||| Sbjct 81580 TATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 81639 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 || ||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 81640 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 81699 Query 18546 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 18605 |||||||| || || | | |||||||||||| |||||||| || || | ||||| || Sbjct 81700 TATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCC 81759 Query 18606 TTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAG 18665 ||| | || | || || || || || || ||||||||||| ||||| | || || Sbjct 81760 GCAGAAGTAGGAATAATAGCACCAGAAATAATATTGTTTCCATAAAGTAAAGAACCAGAA 81819 Query 18666 ACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 |||||||||||||||||||| || || || ||||||||||| | || || || | |||| Sbjct 81820 ACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAAT 81879 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | | || |||||| || | | ||||||||| | || || ||||| || | ||| || Sbjct 81880 ACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGA 81939 Query 18786 CGGTTGTTTGTACTCGTAACCCAGT 18810 ||||| | || || || | ||||| Sbjct 81940 CGGTTTTCGGTGCTAGTTATCCAGT 81964 >seq7 Length=35964315 Score = 232 bits (256), Expect = 2e-56 Identities = 334/465 (72%), Gaps = 12/465 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 24459715 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 24459656 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | |||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 24459655 AGCACGGTTGGTGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA-- 24459598 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| || || || |||||||| || || | || || Sbjct 24459597 -GATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 24459539 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 24459538 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACAAGAGTTGTT 24459479 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 24459478 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCCACAATGTTATA 24459419 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || |||||||||| |||||||| || || | || ||||||| ||||| ||||| Sbjct 24459418 AATCCCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTC 24459359 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | ||| || |||| || ||||||||| ||||| | || || Sbjct 24459358 CCTGATCAAACTATAGG--TTACCAAG-GAACCATGCATAGCACTGAATAGGGAACCGCC 24459302 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGAT 18292 |||||| || || ||||| | ||| || || |||||||||| ||| Sbjct 24459301 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAATGAT 24459257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151317794442678