Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq7 114 7e-21 seq5 105 3e-18 seq2 104 1e-17 seq1 104 1e-17 seq4 98.7 5e-16 >seq7 Length=35964315 Score = 114 bits (126), Expect = 7e-21 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 26063 CTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTC 26122 ||||||||||| || |||||||||||||| || || | |||||| ||||||||||| Sbjct 14546056 CTACCTTTTCTCTTGCCTCCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGT 14545997 Query 26123 AACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGAT 26182 | ||| ||||| | |||| | ||| || ||||| | |||| | | || || | | Sbjct 14545996 AGCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCT 14545937 Query 26183 CTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC 26241 | ||||| |||| ||| | ||| ||||| ||||| ||||| || ||||| || Sbjct 14545936 CGAATATTGTGA-ATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCATAGCACATTC 14545878 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||| | ||||| ||||||| | || |||||| ||||||| Sbjct 14545877 TGAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 14545836 Score = 109 bits (120), Expect = 3e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 26063 CTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTC 26122 ||||||||||| || |||||||||||||| || || | ||||| ||||||||||| Sbjct 3450159 CTACCTTTTCTGTTGCCTCCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGT 3450218 Query 26123 AACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGAT 26182 | ||| ||||| | |||| | ||| || ||||| | |||| | | || || | | Sbjct 3450219 AGCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCT 3450278 Query 26183 CTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC 26241 | ||| | | || ||| | ||| ||||| ||||| ||||| || || ||||| || Sbjct 3450279 CGAATGTTGGGA-ATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCGCAGCACATTC 3450337 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||| | ||||| ||||||| | || |||||| ||||||| Sbjct 3450338 TGAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 3450379 >seq5 Length=47252588 Score = 105 bits (116), Expect = 3e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 26063 CTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTC 26122 ||||||||||| || |||||||||||||| || || | ||||| ||||||||||| Sbjct 3403350 CTACCTTTTCTCTTGCCTCCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGT 3403291 Query 26123 AACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGAT 26182 | ||| ||||| | |||| | ||| || ||||| | |||| | | || || | | Sbjct 3403290 AGCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCT 3403231 Query 26183 CTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC 26241 | ||| | |||| ||| | ||| ||||| ||||| ||||| || | ||| | || Sbjct 3403230 CGAATGTTGTGA-ATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCGTAGCATATTC 3403172 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||| | ||||| ||||||| | || |||||| ||||||| Sbjct 3403171 TGAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 3403130 >seq2 Length=49199997 Score = 104 bits (114), Expect = 1e-17 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 26063 CTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTC 26122 ||||||||| | || |||||||||||||| || || | ||||| ||||||||||| Sbjct 20643136 CTACCTTTTATCTTGCCTCCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGT 20643077 Query 26123 AACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCT-GTCGA 26181 | ||| ||||| | |||| | ||| || ||||| | |||| | | || | || | Sbjct 20643076 AGCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAAT-GTAGCTCGTAGTAGC 20643018 Query 26182 TCTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT 26240 || ||| | |||| ||| | ||| ||||| ||||| ||||| || || ||||| | Sbjct 20643017 TCGAATGTTGTGA-ATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCGCAGCACATT 20642959 Query 26241 CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 |||| | ||||| ||||||| | || |||||| ||||||| Sbjct 20642958 CTGAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 20642916 Score = 82.4 bits (90), Expect = 4e-11 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 26063 CTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTC 26122 ||||||||||| || |||||||||||||| || || | ||||| ||||| | || | Sbjct 20754539 CTACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATT--ACACGT-- 20754594 Query 26123 AACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGAT 26182 | ||| ||||| |||| | ||| || ||||| | |||| | | || || | | Sbjct 20754595 AGCATAGGAACAGTTCCATTAGAAGTACCATTTGTTCCTCGAATATAGCTCCCAGTAGCT 20754654 Query 26183 CTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC 26241 | ||| | |||| ||| | ||| ||||| ||||| ||||| || || ||||| || Sbjct 20754655 CGAATGTTGTGA-ATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCGCAGCACATTC 20754713 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | | ||||| ||||||| || || ||||| |||||| Sbjct 20754714 CAAGAGAGTATCATAAATTCCCTTAATATTATCATATTTCAT 20754755 >seq1 Length=42145699 Score = 104 bits (114), Expect = 1e-17 Identities = 157/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | ||||| ||||||||||| | Sbjct 40778263 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTA 40778204 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | |||| | ||| || ||||| | |||| | | || || | || Sbjct 40778203 GCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTC 40778144 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 ||| | |||| ||| | ||| ||||| ||||| ||||| || | ||||| || Sbjct 40778143 GAATGTTGTGA-ATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCACAGCACATTCC 40778085 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | || |||||| ||||||| Sbjct 40778084 GAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 40778044 >seq4 Length=40407879 Score = 98.7 bits (108), Expect = 5e-16 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||||||||| || ||||||||||| || || | ||||| || ||||| || | Sbjct 4344651 TACCTTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCGTTGAATACACGTA 4344592 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| ||||| | |||| | || ||| ||||| | |||| | ||| || | | Sbjct 4344591 ACATAGGAACAATTCCATTAGACGTTCCATTTGTTCCTCGAATGTAACTTCCAGTAGCAC 4344532 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 ||||| |||| | ||| | ||| ||||| ||||| |||| ||| | ||||| || Sbjct 4344531 GAATATTGTGAAC-TGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCC 4344473 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | |||||| ||||||| | ||||| ||| ||||||| Sbjct 4344472 TTCAGAGTATCGTAAATTCCCTCAATGCTGTCATCTTTCAT 4344432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038960717275