Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 123 3e-23 seq4 123 3e-23 >seq7 Length=35964315 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 23911907 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTT 23911848 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 23911847 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 23911788 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| |||||| Sbjct 23911787 GCTCATCTCCCGCGACGAGGGCCTCCAC 23911760 >seq4 Length=40407879 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | ||||| || || || ||||| ||||||||||| || || || Sbjct 10866249 CTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGAATCTTCTTCTCGGGCTCCTT 10866190 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||||||||| |||||||| ||||| |||||| || || Sbjct 10866189 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 10866130 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 10866129 GCTCATCTCCCGCGACGAGGGCCTGCAC 10866102 Score = 114 bits (126), Expect = 2e-20 Identities = 217/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||||||| || || |||| ||| ||| || || || || |||||| Sbjct 39891427 GGTGCCAAGATCCCCAAGGGATGTCTCCTCGTCGGTCCGCCTGGGACAGGTAAAACCCTC 39891368 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || || ||| || ||| | || | | Sbjct 39891367 CTGGCGCGTGCCGTCGCCGGAGAGGCTGGCGTGCCTTTCTTCTCCTGCGCCGCGTCCGAG 39891308 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || ||||| ||||| ||||| ||||| ||||| || | ||| Sbjct 39891307 TTCGTCGAGCTCTTCGTCGGTGTCGGTGCATCCAGGGTGCGCGACCTCTTCGAGAAGGCC 39891248 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || ||||||||||| |||||||||||||| || || | ||| || Sbjct 39891247 AAGGCCAAGGCGCCCTGCATTGTCTTCATCGATGAGATTGATGCCGTCGGGAGGCAGCGT 39891188 Query 175516 AGCGCTGGTGGTATG-CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | ||||| | | | | || |||||||| || || || ||||| || || | || Sbjct 39891187 GGTGCTGG-GCTCGGTGGTGGTAACGACGAGAGGGAGCAGACCATTAACCAGCTCTTGAC 39891129 Query 175575 CGAGATGGATGGCTTTG 175591 |||||||||||||||| Sbjct 39891128 TGAGATGGATGGCTTTG 39891112 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||||||||| ||||| || ||||| ||||| || | | ||| Sbjct 38499486 TTTGTGGAGATGTTTGTTGGTGTTGGTGCTTCCAGAGTTCGTGATCTTTTCAAGAAGGCC 38499545 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 38499546 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTCGGTAGGCAAAGA 38499605 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || ||||| | || ||||| | || Sbjct 38499606 GGTACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAAACTCTCAACCAACTGTTGACT 38499665 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| ||| | |||||||| |||||||| | | Sbjct 38499666 GAGATGGATGGTTTTGAGGGAAACACTGGAATTATTGTTATTGCTGCCACTAACAGAGCT 38499725 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||| | ||| || | ||| | || || || ||||| Sbjct 38499726 GACATCTTGGATTCTGCTTTACTTAGGCCTGGACGCTTTGA 38499766 Score = 91.5 bits (100), Expect = 2e-13 Identities = 232/350 (66%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 177565 AACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGT 177624 |||| | ||| | ||| | |||| | || ||||| || || ||| | | || || || Sbjct 1777321 AACTCCTCCACGGTGTGGGACTCCTCGGTGGCGACGACGTAATCACCGGGCTGATCCTGC 1777262 Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684 || |||||||||||||| || || || |||||| ||| |||||||| ||||| ||| Sbjct 1777261 TGCAGCATGAGCCACATTGCCTCGACGTAGTCCCCGGCGAATCCCCAGTCCCTGGCGGCG 1777202 Query 177685 TTGAGGTTACCGAGTTCAAGGAACTCTCTCT-CA--CCTTTCACAATTTGTTTGACGCCA 177741 ||||||| ||||| | || || ||| || || | || | |||| | Sbjct 1777201 GTGAGGTTGCCGAG---GAAGACCTTGGTCTGCAGGCCGACCTTGATGCGGCCGACGGCG 1777145 Query 177742 TCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGG 177801 || ||||| ||||| |||| | || || | || || |||||||||||||| Sbjct 1777144 CGCGTGATCTTGCGCGTGACGAAGTTCTCCCCGCGGCGTGGGGACTCGTGGTTGAAGAGC 1777085 Query 177802 ATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCG 177861 | ||| |||||| | | || |||| || ||||| || | | |||||| ||| Sbjct 1777084 ACGCCGTTGCAGGCGAAGAGCCCGTAGGCCTCGCGGTAGTTGACGGTGTACCAGTGCGCG 1777025 Query 177862 GCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911 || | |||| | || | ||| ||| || |||| || || || ||||| Sbjct 1777024 GCGACCTTGGCGGCGGCGTAGGGGGAGCGGGGGTGAAACGGCGTGTCCTC 1776975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567086950560