Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq337 563 1e-155 seq14 563 1e-155 seq7 289 3e-73 seq8 113 6e-20 >seq337 Length=135516 Score = 563 bits (624), Expect = 1e-155 Identities = 717/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 644 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 703 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | | |||||| || ||| Sbjct 704 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGAT 763 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || ||||| || ||||| |||||||| || | |||||| | || ||| ||| Sbjct 764 TGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAAC 823 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | | ||| || || | | ||| | ||||||||| | | | | |||||| ||| Sbjct 824 CAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 883 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| ||||||||||||| |||||| || || |||||||| ||||| ||||| || Sbjct 884 CTA-GCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGT 942 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 |||||||||||||||||| || ||||| | || |||||| | |||||| || || || Sbjct 943 CTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTCCCT 1002 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 1003 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 1062 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || ||||||||||| ||||| ||||| || |||||||| Sbjct 1063 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCTGGAATAC 1122 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | ||| ||||| || |||||||| || |||| |||||| ||||||||||| || || Sbjct 1123 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 1182 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||||| ||||| | ||||| || || |||||| | || ||||| |||||| || Sbjct 1183 ACCAATAGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 1242 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGC 8549 | ||||| || | |||||| | ||| | | ||||||| | |||||| ||| Sbjct 1243 AGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACA 1302 Query 8550 AGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCA 8609 || | |||| | |||||| | | || | || ||| ||||| || || || ||||| Sbjct 1303 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 1362 Query 8610 CTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGA 8669 ||||| | | |||||||||||||| || || || || ||||| || || |||| Sbjct 1363 TTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAGAAGT 1422 Query 8670 TGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTC 8729 |||| | ||||||||| || || ||||||||||| | || ||||| | |||||| || Sbjct 1423 AGGAATAATAGCACCAGAAATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTC 1482 Query 8730 ACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGC 8789 ||||||||| || ||||| || || |||||||| || || || | ||||| | || Sbjct 1483 ACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGT 1542 Query 8790 AGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTT 8849 || | || ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| | Sbjct 1543 TGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTC 1602 Query 8850 TGTACTTGTAACCCACTCGCAAAA 8873 || || || | ||| | ||| || Sbjct 1603 GGTGCTAGTTATCCAGTTGCAGAA 1626 >seq14 Length=147140 Score = 563 bits (624), Expect = 1e-155 Identities = 717/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 80989 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 81048 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | | |||||| || ||| Sbjct 81049 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGAT 81108 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || ||||| || ||||| |||||||| || | |||||| | || ||| ||| Sbjct 81109 TGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAAC 81168 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | | ||| || || | | ||| | ||||||||| | | | | |||||| ||| Sbjct 81169 CAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 81228 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| ||||||||||||| |||||| || || |||||||| ||||| ||||| || Sbjct 81229 CTA-GCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGT 81287 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 |||||||||||||||||| || ||||| | || |||||| | |||||| || || || Sbjct 81288 CTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTCCCT 81347 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 81348 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 81407 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || ||||||||||| ||||| ||||| || |||||||| Sbjct 81408 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCTGGAATAC 81467 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | ||| ||||| || |||||||| || |||| |||||| ||||||||||| || || Sbjct 81468 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 81527 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||||| ||||| | ||||| || || |||||| | || ||||| |||||| || Sbjct 81528 ACCAATAGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 81587 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGC 8549 | ||||| || | |||||| | ||| | | ||||||| | |||||| ||| Sbjct 81588 AGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACA 81647 Query 8550 AGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCA 8609 || | |||| | |||||| | | || | || ||| ||||| || || || ||||| Sbjct 81648 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 81707 Query 8610 CTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGA 8669 ||||| | | |||||||||||||| || || || || ||||| || || |||| Sbjct 81708 TTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAGAAGT 81767 Query 8670 TGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTC 8729 |||| | ||||||||| || || ||||||||||| | || ||||| | |||||| || Sbjct 81768 AGGAATAATAGCACCAGAAATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTC 81827 Query 8730 ACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGC 8789 ||||||||| || ||||| || || |||||||| || || || | ||||| | || Sbjct 81828 ACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGT 81887 Query 8790 AGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTT 8849 || | || ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| | Sbjct 81888 TGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTC 81947 Query 8850 TGTACTTGTAACCCACTCGCAAAA 8873 || || || | ||| | ||| || Sbjct 81948 GGTGCTAGTTATCCAGTTGCAGAA 81971 >seq7 Length=35964315 Score = 289 bits (320), Expect = 3e-73 Identities = 341/457 (75%), Gaps = 6/457 (1%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 24459714 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 24459655 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 || | ||| | ||| ||| |||| ||| ||| | ||| | | |||||| || | Sbjct 24459654 GCACGGTTGGTGATA--TCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAG 24459597 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || || || || || ||||| |||||||| || | |||||| | || ||| | Sbjct 24459596 ATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGA 24459537 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-A 8127 |||| | | ||| || || | | ||| | ||||||||| | | | | |||||| | Sbjct 24459536 ACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACAAGAGTTGTTGA 24459477 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 ||| | ||||| ||||||||||||| |||||| || ||||||||||| ||||| ||||| Sbjct 24459476 AACTA-GCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCCACAATGTTATAA 24459418 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || |||||||||||||||| || ||||| | || |||||| | |||||| || || Sbjct 24459417 ATCCCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTCC 24459358 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | | | || || || ||||| |||||||||||||| || || || ||||| Sbjct 24459357 CTGATCAAACTATAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAAT 24459298 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAA 8344 | ||| ||||| ||| ||| || || |||||||||| Sbjct 24459297 ACACCAGCTACACCTAACATGTGAAATGGATGCATAA 24459261 >seq8 Length=40689132 Score = 113 bits (124), Expect = 6e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 8145 GATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACC 8204 |||||||| |||||| || || |||||||| ||||| ||||| ||| ||||||||||||| Sbjct 1980172 GATTAATCAACCAAAATAACCGTGAGCAGCCACAATGTTATAAGTCCCTTCTTCTTGACC 1980231 Query 8205 AAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGT 8264 ||| || ||||| | || |||||| | |||||| || || ||||| | | ||| || Sbjct 1980232 AAATTTGTAACCCTTATTAGCAGACTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGT 1980291 Query 8265 AACTAAAGAACCGTG 8279 || || |||||||| Sbjct 1980292 TACCAAGGAACCGTG 1980306 Score = 105 bits (116), Expect = 8e-18 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 8145 GATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACC 8204 |||||||| |||||| || || |||||||| ||||| ||||| ||| ||||||||||||| Sbjct 30734471 GATTAATCAACCAAAATAACCGTGAGCAGCCACAATGTTATAAGTCCCTTCTTCTTGACC 30734530 Query 8205 AAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT----CTGATTAGAGAAG 8260 ||| || ||||| | || |||||| | |||||| || ||| ||||| | | || Sbjct 30734531 AAATTTGTAACCCTTATTAGCAGACTCATTTTCAGTGGTTTCTTTCCCTGATCAAACTAG 30734590 Query 8261 ATGTAACTAAAGAACCGTG 8279 | || || || |||||||| Sbjct 30734591 AGGTTACCAAGGAACCGTG 30734609 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 8145 GATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACC 8204 |||||||| |||||| || || |||||||| ||||| ||||| ||| ||||||||||||| Sbjct 30663620 GATTAATCAACCAAAATAACCGTGAGCAGCCACAATGTTATAAGTCCCTTCTTCTTGACC 30663679 Query 8205 AAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGT 8264 || || ||||| | || |||||| | |||| | || || ||||| | | ||| || Sbjct 30663680 TAATTTGTAACCCTTATTAGCAGACTCATTTTCACTGGTTTCCCTGATCAAACTAGAGGT 30663739 Query 8265 AACTAAAGAACCGTG 8279 || || |||||||| Sbjct 30663740 TACCAAGGAACCGTG 30663754 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 8145 GATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACC 8204 |||||||| |||||| || || |||||||| ||||| ||||| ||| ||||||||||||| Sbjct 30740255 GATTAATCAACCAAAATAACCGTGAGCAGCCACAATGTTATAAGTCCCTTCTTCTTGACC 30740314 Query 8205 AAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGT 8264 ||| || ||||| | || | |||| | |||||| || || |||| | | ||| || Sbjct 30740315 AAATTTGTAACCCTTATTAGCATACTCATTTTCAGTGGTTTCCGTGATCAAACTAGAGGT 30740374 Query 8265 AACTAAAGAACCGTG 8279 || || |||||||| Sbjct 30740375 TACCAAGGAACCGTG 30740389 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 8145 GATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACC 8204 |||||||| |||||| || || |||||||| ||||| ||||| ||| ||||||||||||| Sbjct 30748379 GATTAATCAACCAAAATAACCGTGAGCAGCCACAATGTTATAAGTCCCTTCTTCTTGACC 30748438 Query 8205 AAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGT 8264 ||| || ||||| | || | |||| | |||||| || || |||| | | ||| || Sbjct 30748439 AAATTTGTAACCCTTATTAGCATACTCATTTTCAGTGGTTTCCGTGATCAAACTAGAGGT 30748498 Query 8265 AACTAAAGAACCGTG 8279 || || |||||||| Sbjct 30748499 TACCAAGGAACCGTG 30748513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615859805679640