Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq337 531 1e-146 seq14 531 1e-146 seq7 246 9e-61 seq8 82.4 2e-11 >seq337 Length=135516 Score = 531 bits (588), Expect = 1e-146 Identities = 697/960 (73%), Gaps = 8/960 (1%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | ||||| || | ||| ||| |||| Sbjct 1599 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGC--- 1544 Query 41320 AACTT--GT-TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCG 41376 ||||| || |||||||||||||| | | || || || || || || ||||| || || Sbjct 1543 AACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCG 1484 Query 41377 AGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCC 41436 || || || |||| || | | ||||| ||||| || || || || || | |||| Sbjct 1483 TGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATTTCTGGTGCTATTATTCC 1424 Query 41437 GAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGA 41496 | | || |||||| | || || |||||||||||||||||||| | ||||||| Sbjct 1423 TACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGA 1364 Query 41497 ATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTT 41556 |||| | ||||| |||||||| | | || | || | |||||| | |||| || Sbjct 1363 ATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 1304 Query 41557 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTT 41616 | ||| ||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 1303 TTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGC 1244 Query 41617 TGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGG 41676 |||||| || || |||||||| || ||||| |||||||| ||| | ||||||| |||| Sbjct 1243 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGG 1184 Query 41677 ACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCT 41736 || || ||| ||||||| |||||| || || ||||| || || ||||||| ||| | Sbjct 1183 TCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 1124 Query 41737 GGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796 || |||||||| |||||||| || ||||||||||| ||||||||| | ||||| || || Sbjct 1123 TGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGG 1064 Query 41797 CGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCAT 41856 ||||| || || | ||| ||||||||| ||| | |||| || || | || Sbjct 1063 TGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 1004 Query 41857 TCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGA 41916 | || || |||||| | | || || | |||||||| ||||||||||| ||||| Sbjct 1003 CAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGA 944 Query 41917 GACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAG 41976 |||||| || ||||| ||||||||||| ||||||||||| | ||||||||||||||||| Sbjct 943 GACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAG 884 Query 41977 CTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTG 42036 || || || || ||| | | || ||||| | ||||| |||||||| ||||| || || Sbjct 883 TTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTG 824 Query 42037 GTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCA 42096 ||| |||| | || | ||| ||||| |||||| | ||||| ||||| || ||||| Sbjct 823 GTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGATTCAATTTCAACCA 764 Query 42097 ATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGC 42156 |||| | | | | | | || | || || || || |||||||| || | |||||||| Sbjct 763 ATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGC 704 Query 42157 CAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 || ||||| | || || ||||| || || || || ||||||||||| || ||||| || Sbjct 703 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 644 >seq14 Length=147140 Score = 531 bits (588), Expect = 1e-146 Identities = 697/960 (73%), Gaps = 8/960 (1%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | ||||| || | ||| ||| |||| Sbjct 81944 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGC--- 81889 Query 41320 AACTT--GT-TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCG 41376 ||||| || |||||||||||||| | | || || || || || || ||||| || || Sbjct 81888 AACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCG 81829 Query 41377 AGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCC 41436 || || || |||| || | | ||||| ||||| || || || || || | |||| Sbjct 81828 TGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATTTCTGGTGCTATTATTCC 81769 Query 41437 GAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGA 41496 | | || |||||| | || || |||||||||||||||||||| | ||||||| Sbjct 81768 TACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGA 81709 Query 41497 ATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTT 41556 |||| | ||||| |||||||| | | || | || | |||||| | |||| || Sbjct 81708 ATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 81649 Query 41557 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTT 41616 | ||| ||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 81648 TTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGC 81589 Query 41617 TGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGG 41676 |||||| || || |||||||| || ||||| |||||||| ||| | ||||||| |||| Sbjct 81588 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGG 81529 Query 41677 ACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCT 41736 || || ||| ||||||| |||||| || || ||||| || || ||||||| ||| | Sbjct 81528 TCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 81469 Query 41737 GGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796 || |||||||| |||||||| || ||||||||||| ||||||||| | ||||| || || Sbjct 81468 TGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGG 81409 Query 41797 CGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCAT 41856 ||||| || || | ||| ||||||||| ||| | |||| || || | || Sbjct 81408 TGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 81349 Query 41857 TCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGA 41916 | || || |||||| | | || || | |||||||| ||||||||||| ||||| Sbjct 81348 CAGGGAAACCACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGA 81289 Query 41917 GACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAG 41976 |||||| || ||||| ||||||||||| ||||||||||| | ||||||||||||||||| Sbjct 81288 GACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAG 81229 Query 41977 CTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTG 42036 || || || || ||| | | || ||||| | ||||| |||||||| ||||| || || Sbjct 81228 TTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTG 81169 Query 42037 GTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCA 42096 ||| |||| | || | ||| ||||| |||||| | ||||| ||||| || ||||| Sbjct 81168 GTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGATTCAATTTCAACCA 81109 Query 42097 ATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGC 42156 |||| | | | | | | || | || || || || |||||||| || | |||||||| Sbjct 81108 ATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGC 81049 Query 42157 CAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 || ||||| | || || ||||| || || || || ||||||||||| || ||||| || Sbjct 81048 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 80989 >seq7 Length=35964315 Score = 246 bits (272), Expect = 9e-61 Identities = 327/454 (72%), Gaps = 0/454 (0%) Strand=Plus/Plus Query 41763 TTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTG 41822 |||||||||| ||||||||| | ||||| || || ||||| || || | ||| || Sbjct 24459261 TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTG 24459320 Query 41823 CTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCAC 41882 ||||||| ||| | |||| || | | || | || || |||||| | | || Sbjct 24459321 CTATGCATGGTTCCTTGGTAACCTATAGTTTGATCAGGGAAACCACTGAAAATGAGTCTG 24459380 Query 41883 AGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACG 41942 || | |||||||| ||||||||||| |||| || ||| || ||||| |||||||| | Sbjct 24459381 CTAATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTGCTCATG 24459440 Query 41943 GCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATT 42002 | ||||||||||| | ||||||||||||||||| || || || || || | | || | Sbjct 24459441 GTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTTTACACT 24459500 Query 42003 TCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCA 42062 |||| | ||||| |||||||| ||||| || ||||| |||| | || | ||| | Sbjct 24459501 TCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTA 24459560 Query 42063 TGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGG 42122 |||| |||||| | ||||||||||| || ||||||||| | | | | | | || | | Sbjct 24459561 TGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCG 24459620 Query 42123 TGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATG 42182 | || || || |||||||| || |||||||| || ||||| | || || ||||| | Sbjct 24459621 TTATTAATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTAATGCACG 24459680 Query 42183 AGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 | || || || ||||||||||| || ||||| || Sbjct 24459681 AACGTAATGCTCACAACTTCCCTCTAGACCTAGC 24459714 >seq8 Length=40689132 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| ||||||||||| |||| |||||| || ||||| ||||||||||| |||||| Sbjct 1980243 GGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTATTTT 1980184 Query 41951 GGT 41953 ||| Sbjct 1980183 GGT 1980181 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| ||||||||||| |||| |||||| || ||||| ||||||||||| |||||| Sbjct 30734542 GGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTATTTT 30734483 Query 41951 GGT 41953 ||| Sbjct 30734482 GGT 30734480 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| ||||||||||| |||| |||||| || ||||| ||||||||||| |||||| Sbjct 30740326 GGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTATTTT 30740267 Query 41951 GGT 41953 ||| Sbjct 30740266 GGT 30740264 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| ||||||||||| |||| |||||| || ||||| ||||||||||| |||||| Sbjct 30748450 GGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTATTTT 30748391 Query 41951 GGT 41953 ||| Sbjct 30748390 GGT 30748388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146213814868248