Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq337 511 1e-140 seq14 511 1e-140 seq7 215 2e-51 >seq337 Length=135516 Score = 511 bits (566), Expect = 1e-140 Identities = 700/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 644 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 703 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || || ||| ||||| || Sbjct 704 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGACTATCAACTACAGA 762 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || ||||||||||| |||||||| || | ||||| | || || | Sbjct 763 TTGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAA 822 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| || || Sbjct 823 CCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAA 882 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 883 ACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGT 942 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 |||||| ||||| ||||| || || || | ||| || | | || || ||||| Sbjct 943 CTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTCCCT 1002 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 1003 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 1062 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || || || || || |||||||| Sbjct 1063 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCTGGAATAC 1122 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 1123 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 1182 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | |||||||| ||||| || || ||| || | | || |||| ||||||||| Sbjct 1183 ACCAATAGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 1242 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 1243 AGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACA 1302 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 1303 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 1362 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||||||||| || ||||||||||| | |||||| || ||| | Sbjct 1363 TTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAGAAGT 1422 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | ||| || || ||||| ||||| Sbjct 1423 AGGAATAATAGCACCAGAAATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTC 1482 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGT 26775 ||| || ||||| |||||||| || || || ||||||||||| | ||||| | ||| Sbjct 1483 ACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGT 1542 Query 26776 GGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | |||| || ||||| | || ||||||||||| | || |||||||| || Sbjct 1543 TGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTC 1602 Query 26836 AGTACTTGTAACCCA 26850 || || || | ||| Sbjct 1603 GGTGCTAGTTATCCA 1617 >seq14 Length=147140 Score = 511 bits (566), Expect = 1e-140 Identities = 700/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 80989 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 81048 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || || ||| ||||| || Sbjct 81049 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGACTATCAACTACAGA 81107 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || ||||||||||| |||||||| || | ||||| | || || | Sbjct 81108 TTGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAA 81167 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| || || Sbjct 81168 CCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAA 81227 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 81228 ACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGT 81287 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 |||||| ||||| ||||| || || || | ||| || | | || || ||||| Sbjct 81288 CTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTCCCT 81347 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 81348 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 81407 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || || || || || |||||||| Sbjct 81408 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCTGGAATAC 81467 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 81468 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 81527 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | |||||||| ||||| || || ||| || | | || |||| ||||||||| Sbjct 81528 ACCAATAGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 81587 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 81588 AGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACA 81647 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 81648 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 81707 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||||||||| || ||||||||||| | |||||| || ||| | Sbjct 81708 TTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAGAAGT 81767 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | ||| || || ||||| ||||| Sbjct 81768 AGGAATAATAGCACCAGAAATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTC 81827 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGT 26775 ||| || ||||| |||||||| || || || ||||||||||| | ||||| | ||| Sbjct 81828 ACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGT 81887 Query 26776 GGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | |||| || ||||| | || ||||||||||| | || |||||||| || Sbjct 81888 TGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTC 81947 Query 26836 AGTACTTGTAACCCA 26850 || || || | ||| Sbjct 81948 GGTGCTAGTTATCCA 81962 >seq7 Length=35964315 Score = 215 bits (238), Expect = 2e-51 Identities = 321/453 (71%), Gaps = 2/453 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 24459714 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 24459655 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | ||||||||| ||| || || | | || || ||| ||||| || Sbjct 24459654 GCACGGTTGGTGATATCAGCCCAAGTAT-TAATAACGCGACCTTGACTATCAACTACAGA 24459596 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||||||| |||||||| || | ||||| | || || | Sbjct 24459595 TTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAA 24459536 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | ||||| ||| || || Sbjct 24459535 CCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACAAGAGTTGTTGAA 24459476 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || || || ||||| ||||| ||||| | Sbjct 24459475 ACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCCACAATGTTATAAAT 24459416 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 | |||| ||||| ||||| || || || | ||| || | | || || ||||| Sbjct 24459415 CCCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTCCCT 24459356 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | | || ||||| || ||||||||| ||| || | || ||||| || Sbjct 24459355 GATCAAACTATAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 24459296 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCAT 26328 ||||| ||||| ||| || ||||| ||||| Sbjct 24459295 ACCAGCTACACCTAACATGTGAAATGGATGCAT 24459263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711408875040