Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq337 650 0.0 seq14 650 0.0 seq7 327 1e-84 seq8 93.3 5e-14 >seq337 Length=135516 Score = 650 bits (720), Expect = 0.0 Identities = 741/992 (75%), Gaps = 12/992 (1%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 1625 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 1566 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||||||||| ||||| |||| Sbjct 1565 TGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTC 1506 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| ||||| | Sbjct 1505 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATA 1446 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | || ||||||||| || | |||| ||| || || || | || || || || |||| Sbjct 1445 TTATTTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTT 1386 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||| ||||| |||||||| ||||||| | || | || Sbjct 1385 GGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTC 1326 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | |||||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 1325 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1269 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || ||||| |||||||| ||||||||| || || || || | ||||| | Sbjct 1268 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1209 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | |||||||| | |||||||| ||||||||||| |||||| | || | Sbjct 1208 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 1149 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 | ||||||||||| |||| |||| | || ||||| || || ||||| ||||||||||| | Sbjct 1148 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATC 1089 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| | Sbjct 1088 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 1029 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | ||| | ||||| ||||| | |||||| || | | Sbjct 1028 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGG 969 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 ||||||| || || ||||||||||| |||||||||||||| |||||||| || || || | Sbjct 968 GTTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTG 909 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 |||| | |||||||| ||||| ||||||||||| | | | ||||||||| | | Sbjct 908 GTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGG 849 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 |||| |||||||| || | |||||| |||||| | ||| | || |||||||||| Sbjct 848 CTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCA 789 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCC 155863 |||| || || ||||| |||||||| |||||||| || |||| ||| || || Sbjct 788 ACCTAAATGGATTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGCGTTATTA 732 Query 155864 CTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTA 155923 ||| ||||| || || | ||||| ||| |||||||||||||||||||||||| |||| Sbjct 731 ATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTA 672 Query 155924 ACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 | ||||||||||||||||| ||||| |||||| Sbjct 671 ATGCTCACAACTTCCCTCTAGACCTAGCTGCT 640 >seq14 Length=147140 Score = 650 bits (720), Expect = 0.0 Identities = 741/992 (75%), Gaps = 12/992 (1%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 81970 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 81911 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||||||||| ||||| |||| Sbjct 81910 TGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTC 81851 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| ||||| | Sbjct 81850 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATA 81791 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | || ||||||||| || | |||| ||| || || || | || || || || |||| Sbjct 81790 TTATTTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTT 81731 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||| ||||| |||||||| ||||||| | || | || Sbjct 81730 GGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTC 81671 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | |||||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 81670 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 81614 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || ||||| |||||||| ||||||||| || || || || | ||||| | Sbjct 81613 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 81554 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | |||||||| | |||||||| ||||||||||| |||||| | || | Sbjct 81553 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 81494 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 | ||||||||||| |||| |||| | || ||||| || || ||||| ||||||||||| | Sbjct 81493 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATC 81434 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| | Sbjct 81433 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 81374 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | ||| | ||||| ||||| | |||||| || | | Sbjct 81373 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAGG 81314 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 ||||||| || || ||||||||||| |||||||||||||| |||||||| || || || | Sbjct 81313 GTTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTG 81254 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 |||| | |||||||| ||||| ||||||||||| | | | ||||||||| | | Sbjct 81253 GTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGG 81194 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 |||| |||||||| || | |||||| |||||| | ||| | || |||||||||| Sbjct 81193 CTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCA 81134 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCC 155863 |||| || || ||||| |||||||| |||||||| || |||| ||| || || Sbjct 81133 ACCTAAATGGATTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGCGTTATTA 81077 Query 155864 CTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTA 155923 ||| ||||| || || | ||||| ||| |||||||||||||||||||||||| |||| Sbjct 81076 ATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTA 81017 Query 155924 ACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 | ||||||||||||||||| ||||| |||||| Sbjct 81016 ATGCTCACAACTTCCCTCTAGACCTAGCTGCT 80985 >seq7 Length=35964315 Score = 327 bits (362), Expect = 1e-84 Identities = 351/463 (76%), Gaps = 6/463 (1%) Strand=Plus/Plus Query 155494 ATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTC 155553 ||| ||||||| || || |||||| | || ||||| ||||| ||||| || || || ||| Sbjct 24459257 ATCATTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTC 24459316 Query 155554 TCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAG 155613 ||||||||| ||||| ||||| || | | | ||| | ||||| ||||| | ||| Sbjct 24459317 AGTGCTATGCATGGTTCCTTGGTAACCTATAGTTTGATCAGGGAAACCACTGAAAATGAG 24459376 Query 155614 TCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCT 155673 ||| || | |||||||| || || |||||||||| | |||||||||||| |||||| Sbjct 24459377 TCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTGCT 24459436 Query 155674 CATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTT 155733 ||||| || || ||||| | |||||||| ||||| ||||||||||| | | | Sbjct 24459437 CATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTTTA 24459496 Query 155734 CACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCA 155793 ||||||||| | ||||| |||||||| || | |||||| |||||| | ||| | Sbjct 24459497 CACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGT 24459556 Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT--- 155850 || |||||||||||||| || |||||||| |||||||| |||||||| || |||| Sbjct 24459557 ACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAA 24459613 Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910 ||| || || ||| ||||| || || ||||| ||| |||||||||||||||| Sbjct 24459614 GGTCGCGTTATTAATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTA 24459673 Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTG 155953 |||||||| ||||| ||||||||||||||||| ||||| |||| Sbjct 24459674 ATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 24459716 >seq8 Length=40689132 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 155563 CACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAAC 155622 |||||||| ||||| || ||| | ||| | ||||| ||||| | |||||| || Sbjct 1980306 CACGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAAT 1980247 Query 155623 TATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATAC 155682 | |||||||| || || |||||||||| |||||||||||||| |||||||| || || Sbjct 1980246 AAGGGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTAT 1980187 Query 155683 TTCGGT 155688 || ||| Sbjct 1980186 TTTGGT 1980181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 155563 CACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAAC 155622 |||||||| ||||| || ||| | ||| | ||||| | ||| | |||||| || Sbjct 30663754 CACGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAGTGAAAATGAGTCTGCTAAT 30663695 Query 155623 TATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATAC 155682 | |||||||| || || |||||||||| |||||||||||||| |||||||| || || Sbjct 30663694 AAGGGTTACAAATTAGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTAT 30663635 Query 155683 TTCGGT 155688 || ||| Sbjct 30663634 TTTGGT 30663629 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 155563 CACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAAC 155622 |||||||| ||||| || ||| | ||| ||||| ||||| | |||| | || Sbjct 30740389 CACGGTTCCTTGGTAACCTCTAGTTTGATCACGGAAACCACTGAAAATGAGTATGCTAAT 30740330 Query 155623 TATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATAC 155682 | |||||||| || || |||||||||| |||||||||||||| |||||||| || || Sbjct 30740329 AAGGGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTAT 30740270 Query 155683 TTCGGT 155688 || ||| Sbjct 30740269 TTTGGT 30740264 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 155563 CACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAAC 155622 |||||||| ||||| || ||| | ||| ||||| ||||| | |||| | || Sbjct 30748513 CACGGTTCCTTGGTAACCTCTAGTTTGATCACGGAAACCACTGAAAATGAGTATGCTAAT 30748454 Query 155623 TATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATAC 155682 | |||||||| || || |||||||||| |||||||||||||| |||||||| || || Sbjct 30748453 AAGGGTTACAAATTTGGTCAAGAAGAAGGGACTTATAACATTGTGGCTGCTCACGGTTAT 30748394 Query 155683 TTCGGT 155688 || ||| Sbjct 30748393 TTTGGT 30748388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584832736381720