Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq337 560 3e-155 seq14 560 3e-155 seq7 223 1e-53 >seq337 Length=135516 Score = 560 bits (620), Expect = 3e-155 Identities = 722/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 640 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 699 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | | ||| | | ||||||||||||| ||| || ||| | | || ||||| Sbjct 700 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 759 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || || ||||| ||||| || ||||||||| ||||| | | || Sbjct 760 AGATTGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 819 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | ||| || || | || || ||||| ||||||| |||||||| | ||| |||| Sbjct 820 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGAACGAGAGTTGT 878 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||||||| || |||| || |||||| |||||||| ||||| || ||||||| Sbjct 879 TGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTAT 938 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 ||||||| |||| |||||||| || || || | || || ||| |||| ||||| | Sbjct 939 AAGTCTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTT 998 Query 40888 CCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCAC 40944 ||| || | | |||| || ||||| || ||||||||| || | | ||| | Sbjct 999 CCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGC 1055 Query 40945 CAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTT 41004 | || || || || || || | ||| || ||||| ||||| || |||||||| || || | Sbjct 1056 CGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCT 1115 Query 41005 GGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAG 41064 |||| |||| ||| |||||||| || ||| ||||||||||||||||||||||||||| Sbjct 1116 GGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAAC 1175 Query 41065 AACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGT 41124 || ||||| | ||||||| ||||| ||||| ||| |||| | ||||||| | Sbjct 1176 TTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1235 Query 41125 ATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAG 41184 |||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 1236 ATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 1295 Query 41185 CGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGT 41244 || ||||| || | ||| ||||| | ||||| || | ||| || ||||| |||| Sbjct 1296 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 1355 Query 41245 ATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 ||| ||| || || | | | |||||||| |||||||| ||||| | |||||| || Sbjct 1356 ATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCG 1415 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | |||| | ||| ||||| ||||||||||| || || | ||| || || |||| Sbjct 1416 CAGAAGTAGGAATAATAGCACCAGAAATAATATTGTTTCCATAAAGTAAAGAACCAGAAA 1475 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAAC 41424 | |||||||| || ||||| |||||||| || || || ||||| |||||||| || || Sbjct 1476 CAGGCTCACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATA 1535 Query 41425 ATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGC 41484 | || || || | ||| | || ||||| | ||||| ||||| || | ||| || | Sbjct 1536 CGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 1595 Query 41485 GGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||| ||||||||||| | |||||| || || Sbjct 1596 GGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 1626 >seq14 Length=147140 Score = 560 bits (620), Expect = 3e-155 Identities = 722/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 80985 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 81044 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | | ||| | | ||||||||||||| ||| || ||| | | || ||||| Sbjct 81045 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 81104 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || || ||||| ||||| || ||||||||| ||||| | | || Sbjct 81105 AGATTGGTTGAAATTGAATCCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 81164 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | ||| || || | || || ||||| ||||||| |||||||| | ||| |||| Sbjct 81165 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGAACGAGAGTTGT 81223 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||||||| || |||| || |||||| |||||||| ||||| || ||||||| Sbjct 81224 TGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTAT 81283 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 ||||||| |||| |||||||| || || || | || || ||| |||| ||||| | Sbjct 81284 AAGTCTCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTT 81343 Query 40888 CCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCAC 40944 ||| || | | |||| || ||||| || ||||||||| || | | ||| | Sbjct 81344 CCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGC 81400 Query 40945 CAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTT 41004 | || || || || || || | ||| || ||||| ||||| || |||||||| || || | Sbjct 81401 CGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCCGCCT 81460 Query 41005 GGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAG 41064 |||| |||| ||| |||||||| || ||| ||||||||||||||||||||||||||| Sbjct 81461 GGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAAC 81520 Query 41065 AACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGT 41124 || ||||| | ||||||| ||||| ||||| ||| |||| | ||||||| | Sbjct 81521 TTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 81580 Query 41125 ATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAG 41184 |||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 81581 ATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 81640 Query 41185 CGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGT 41244 || ||||| || | ||| ||||| | ||||| || | ||| || ||||| |||| Sbjct 81641 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 81700 Query 41245 ATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 ||| ||| || || | | | |||||||| |||||||| ||||| | |||||| || Sbjct 81701 ATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCG 81760 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | |||| | ||| ||||| ||||||||||| || || | ||| || || |||| Sbjct 81761 CAGAAGTAGGAATAATAGCACCAGAAATAATATTGTTTCCATAAAGTAAAGAACCAGAAA 81820 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAAC 41424 | |||||||| || ||||| |||||||| || || || ||||| |||||||| || || Sbjct 81821 CAGGCTCACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATA 81880 Query 41425 ATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGC 41484 | || || || | ||| | || ||||| | ||||| ||||| || | ||| || | Sbjct 81881 CGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 81940 Query 41485 GGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||| ||||||||||| | |||||| || || Sbjct 81941 GGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 81971 >seq7 Length=35964315 Score = 223 bits (246), Expect = 1e-53 Identities = 327/457 (72%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| | Sbjct 24459715 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 24459656 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 | ||| | ||||||||||||| ||| || ||| | | || ||||| || Sbjct 24459655 AGCACGGTTGGTGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGA 24459596 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 ||||| || || |||||||| ||||| || ||||||||| ||||| | | || | Sbjct 24459595 TTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAA 24459536 Query 40712 CCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGA 40770 ||| || || | || || ||||| ||||| |||||||||| | || ||||||| Sbjct 24459535 CCAGATCCCTACTACAGGCCAAGCAGCCAAG-AAGAAGTGTAAAGAACAAGAGTTGTTGA 24459477 Query 40771 ATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAG 40830 | ||||||||| || |||| || |||||| ||||| || ||||| || ||||||||| Sbjct 24459476 AACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCCACAATGTTATAAA 24459417 Query 40831 TCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCC 40890 || | |||| |||||||| || || || | || || ||| |||| ||||| |||| Sbjct 24459416 TCCCTTCTTCTTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTCCC 24459357 Query 40891 GAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 || | | ||| || ||||| || ||||||||| || | | ||| || | Sbjct 24459356 TGATCAAACTATAGG--TTACCAAGG-AACCATGCATAGCACTGAATAGGGAACCGCCGA 24459300 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCAT 40984 | || || || || || | ||| || ||||| ||||| Sbjct 24459299 ATACACCAGCTACACCTAACATGTGAAATGGATGCAT 24459263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143701824920958