Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 132 1e-25 seq8 131 5e-25 seq4 120 9e-22 seq1 111 5e-19 seq7 109 2e-18 seq5 100 8e-16 seq9 98.7 3e-15 seq2 93.3 1e-13 seq3 86.0 2e-11 >seq6 Length=36014550 Score = 132 bits (146), Expect = 1e-25 Identities = 236/341 (69%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||||| || |||||| | ||| ||||| |||||| || | | | ||| Sbjct 4701833 TTTCTTACAGTACCATCATATTTTACCATGATGTCCTCCATAGCTTTCACAAGTCTCCGC 4701774 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || ||||| |||||| ||| || || |||||||||||||| ||||| | | ||||||| Sbjct 4701773 TGGATATACCCAGTTTCAGAAGTCTTGACAGCTGTATCAATAAGACCTTCTCTACCACCC 4701714 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||| ||||| | |||| ||| || || | || | ||| ||||||| ||| Sbjct 4701713 ATAGCATGAAAGAAGAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCAACAAAA 4701654 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCAT 302776 ||||| || || || ||| || || || ||||||| || | | || | | Sbjct 4701653 CCACGACTTTCAGGACCATAGTCATCTTTTGTGAAATGTGGCAACGTTC-GATCGATGA- 4701596 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||| || ||||| || ||||| ||||| ||||| | || | | |||| || | Sbjct 4701595 AACCAAATGGTATCCGCTTGCCCTCAACATTCTGTTGTCCGACACAAGCAGTCATTTGTG 4701536 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||| || | ||| || || ||||| ||| | |||||| Sbjct 4701535 AAATGTTAATGAAACTACCTTTTGAGCCTGCAGTGACCATA 4701495 Score = 111 bits (122), Expect = 5e-19 Identities = 191/274 (70%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 302606 AACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCAT 302665 |||||||| ||| || || |||||||||||||| ||||| | | |||||||||||||| Sbjct 4693821 AACCAGTTTCAGAAGTCTTGACAGCTGTATCAATAAGACCTTCTCTACCACCCATAGCAT 4693762 Query 302666 GGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 | ||||| | |||| ||| || || | || | ||| |||| || |||||||| Sbjct 4693761 GAAAGAAGAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACAAAACCACGAC 4693702 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCATAGCCGTA 302783 || || || ||| || || || ||||||| || | | || | | | || | Sbjct 4693701 TTTCAGGACCATAGTCATCTTTTGTGAAATGTGGCAACGTTC-GATCGATGA-AACCAAA 4693644 Query 302784 TGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| || ||||| || ||||| ||||| ||||| | || | | |||| || ||||| || Sbjct 4693643 TGGTATCCGCTTGCCCTCAACATTCTGTTGTCCGACACAAGCAGTCATTTGTGAAATGTT 4693584 Query 302844 TAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | ||| || || ||||| ||| | |||||| Sbjct 4693583 AATGAAACTACCTTTTGAGCCTGCAGTGACCATA 4693550 >seq8 Length=40689132 Score = 131 bits (144), Expect = 5e-25 Identities = 235/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| ||||| |||||| | ||| ||||| |||||| || | | | || Sbjct 26226802 ATTTCTAACGGTACCATCATATTTTACCATGATGTCCTCCATAGCTTTAACAAGCCTGCG 26226861 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || ||||| ||||| ||| || || ||||| |||||||| ||||| | | |||||| Sbjct 26226862 TTGGATATACCCAGTCTCAGAAGTCTTCACAGCCGTATCAATCAGACCTTCTCTACCACC 26226921 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||| || ||||| | |||| |||| ||| |||| || | ||| |||| || || Sbjct 26226922 TATAGCGTGAAAGAAAAATTCTTGCGGTGTTAGACCCCGAAGGTAAGAGTTCTCCACAAA 26226981 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT-CTCAT 302776 ||||| || || || ||| || | || ||||||| || | | || | Sbjct 26226982 TCCACGACTTTCAGGACCATAGTCATCTTTCCTGAAATGTGGCAATGTTCGGCCACTGAA 26227041 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || ||||||| |||||||| ||||| ||||||||||| | || | | ||| |||| Sbjct 26227042 A-CCAAATGGGATCCGCTTTCCTTCAACATTCTGCTGTCCAACACAAGCAGCCATTTGCG 26227100 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||| || | |||||| || ||||| ||| | |||||| Sbjct 26227101 AAATGTTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 26227141 >seq4 Length=40407879 Score = 120 bits (132), Expect = 9e-22 Identities = 344/513 (67%), Gaps = 22/513 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| | | ||| || | || || || || |||||||| || || Sbjct 38499769 CTGTCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCA 38499710 Query 288910 GCCAATACAACAATAGATTCG---GTTTGCTT-AAATCCATCCATACTTGTTAAAATTTG 288965 || |||| |||||| |||| |||| | | ||| |||||||| || || | ||| Sbjct 38499709 GC-AATA--ACAATA-ATTCCAGTGTTTCCCTCAAAACCATCCATCTCAGTCAACAGTTG 38499654 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 || || ||||| ||||||||||||||| ||| | ||| ||| | | | || || Sbjct 38499653 GTTGAGAGTTTGCTCCCTTTCATCATTTCCACCACC--AAT-ACCTGTACCTCT---TTG 38499600 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||| |||||||||||||| |||| || | | || |||| ||| | | || | Sbjct 38499599 CCTACCGACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTT 38499540 Query 289086 --TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 || ||| | || | || | ||| || |||| ||||||| |||| || ||||| ||| Sbjct 38499539 CTTGAAAAGA--TCACGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCA 38499482 Query 289144 GAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || | || | |||| | |||| ||| || || || || | |||| | || || | Sbjct 38499481 GAGCCTGAAA-TTGAGAAAAATGGCACACCAGCCTCTCCCGCGATTGCCTTGGCAAGCAA 38499423 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 || ||||| ||||||||||| || | | ||||| || || || | || ||| | Sbjct 38499422 AGTTTTACCAGTTCCAGGTGGACCAACAAGAAGAACACCTTTAGGAATGCGAGCACCAAC 38499363 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTG 289321 || | | | ||||| |||| || || || || | |||| | ||| || | |||| Sbjct 38499362 AGCAGTGAACCTTTCAGGTTTCTTCAAGAACTCGACCACTTCCATGAAG-TCTTGCTTTG 38499304 Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 | |||||| || || |||||| |||| |||| Sbjct 38499303 CTTCATCAACGCCAGCAACATCATCAAATGTAA 38499271 >seq1 Length=42145699 Score = 111 bits (122), Expect = 5e-19 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| ||| ||||| ||||| || ||||| | |||||| |||| || Sbjct 40778263 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTA 40778204 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| ||| ||||| ||||| ||||| ||||| ||||| | |||| | | Sbjct 40778203 GCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTC 40778144 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| || ||||| | ||||| || || | ||||| || ||| |||||| Sbjct 40778143 GAATGTTGTGAATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCACAGCACATTCCG 40778084 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| |||| || |||||| |||||||| ||| Sbjct 40778083 AGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 40778044 >seq7 Length=35964315 Score = 109 bits (120), Expect = 2e-18 Identities = 157/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 156048 CTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||||| || |||||||| ||| ||||| ||||| | ||||| | |||||| |||| | Sbjct 14546056 CTACCTTTTCTCTTGCCTCCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGT 14545997 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 |||||||||| ||| ||||| ||||| ||||| ||||| ||||| | |||| | Sbjct 14545996 AGCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCT 14545937 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 |||| ||| ||||| | ||||| || || | ||||| || ||| ||||| Sbjct 14545936 CGAATATTGTGAATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCATAGCACATTCT 14545877 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| |||| || |||||| |||||||| ||| Sbjct 14545876 GAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 14545836 Score = 95.1 bits (104), Expect = 4e-14 Identities = 154/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 156048 CTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||||| || || ||||| ||| ||||| ||||| | ||||| | |||||| |||| | Sbjct 3450159 CTACCTTTTCTGTTGCCTCCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGT 3450218 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 |||||||||| ||| ||||| ||||| ||||| ||||| ||||| | |||| | Sbjct 3450219 AGCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCT 3450278 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 |||| || |||| | ||||| || || | ||||| || ||| ||||| Sbjct 3450279 CGAATGTTGGGAATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCGCAGCACATTCT 3450338 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| |||| || |||||| |||||||| ||| Sbjct 3450339 GAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 3450379 >seq5 Length=47252588 Score = 100 bits (110), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 156048 CTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||||| || |||||||| ||| ||||| ||||| | ||||| | |||||| |||| | Sbjct 3403350 CTACCTTTTCTCTTGCCTCCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGT 3403291 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 |||||||||| ||| ||||| ||||| ||||| ||||| ||||| | |||| | Sbjct 3403290 AGCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCT 3403231 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 |||| || ||||| | ||||| || || | ||||| || ||| |||| Sbjct 3403230 CGAATGTTGTGAATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCGTAGCATATTCT 3403171 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| |||| || |||||| |||||||| ||| Sbjct 3403170 GAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 3403130 >seq9 Length=58970307 Score = 98.7 bits (108), Expect = 3e-15 Identities = 203/299 (68%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| |||||||| || | || |||||||| ||||| |||||| |||| | ||| Sbjct 10262305 GCGATGAGACCACATTTCTCGCATACATGGACTCTGTATGCATCACTCTGGTCAAACAGC 10262364 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| |||| || ||| || || | ||||||||||| | |||||||| || Sbjct 10262365 CTTTCCTTCAGGAAGAAAGCTGCTCCATGGGCGATCATACAATCCCTTTCCATTTCTCCA 10262424 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || || |||||||| || || | | ||||| || ||||| || ||||| | | | Sbjct 10262425 AAGCGGAGACCACCGTCACGCGAACGCCCCTCTGCTGGCTGTCGGGTGAGTATCTGAACA 10262484 Query 251584 GGACCGATGGAGCGGCT---ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||||| | | | || |||| ||| || | ||||| |||||||| | ||||| Sbjct 10262485 GGACC-ACG--ACCTCTAGAATGTATCTTGTCGTCCACCATGTGCTTGAGTCTTTGGTAA 10262541 Query 251641 AATGCGGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACAT 251699 ||| |||||| | || || | | | || || | |||||| || | || ||||| Sbjct 10262542 TATGTGGGACCCAGAAAAATCATAGCTGTCAGTTTCCTTCCAGTGTGACCATTGTACAT 10262600 >seq2 Length=49199997 Score = 93.3 bits (102), Expect = 1e-13 Identities = 156/224 (70%), Gaps = 9/224 (4%) Strand=Plus/Minus Query 156048 CTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||||| || ||||||| ||| ||||| ||||| | ||||| | |||||| |||| | Sbjct 20643136 CTACCTTTTATCTTGCCTCCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGT 20643077 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT---GCGAACCAGAT 156161 |||||||||| ||| ||||| ||||| ||||| ||||| ||||| | || | || | Sbjct 20643076 AGCATAGGAACAATTCCATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCGTAGTAGCT 20643017 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 |||| || ||||| | ||||| || || | ||||| || ||| ||| Sbjct 20643016 ---CGAATGTTGTGAATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCGCAGCACAT 20642960 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || | ||||| |||| || |||||| |||||||| ||| Sbjct 20642959 TCTGAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 20642916 Score = 89.7 bits (98), Expect = 2e-12 Identities = 153/221 (69%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 156048 CTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||||| || |||||||| ||| ||||| ||||| || ||||| | ||| |||| | Sbjct 20754539 CTACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATT----ACACGT 20754594 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 |||||||||| | | ||||| ||||| ||||| ||||| ||||||| |||| | Sbjct 20754595 AGCATAGGAACAGTTCCATTAGAAGTACCATTTGTTCCTCGAATATAGCTCCCAGTAGCT 20754654 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 |||| || ||||| | ||||| || || | ||||| || ||| |||||| Sbjct 20754655 CGAATGTTGTGAATTGAGACACCAATTCCTCCAGCGCATTTGCTTATCGCAGCACATTCC 20754714 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| |||| || | |||| ||||| || ||| Sbjct 20754715 AAGAGAGTATCATAAATTCCCTTAATATTATCATATTTCAT 20754755 >seq3 Length=50651951 Score = 86.0 bits (94), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 20076228 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 20076169 Query 409011 TAGAACAtttttttAAAGTTCCCAT 409035 || |||||||| |||||||| Sbjct 20076168 GGGAGCATTTTTT----GTTCCCAT 20076148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811244967569