Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq5 82.4 6e-11 seq2 82.4 6e-11 seq1 82.4 6e-11 >seq4 Length=40407879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | || ||||| ||||| ||| | || |||| || Sbjct 37851136 ATGCAGATCTTTGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAGGTGGAGTCTTCT 37851077 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| ||||| || ||| | ||| || ||| Sbjct 37851076 GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 37851017 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||| | | || ||||||| |||||| Sbjct 37851016 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCGGATTACAAC 37850957 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 37850956 ATACAGAAGGAGTCCACCCTCCACCTGGTG 37850927 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | || ||||| ||||| ||| | || |||| || Sbjct 37851592 ATGCAGATCTTTGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAGGTGGAGTCTTCT 37851533 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 37851532 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 37851473 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | | || |||| ||||||||| Sbjct 37851472 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAC 37851413 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 37851412 ATACAGAAGGAGTCCACTCTCCACCTGGTG 37851383 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || || || ||||| ||| | || ||| || | Sbjct 38277576 ATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTCGAGTCTTCC 38277635 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | || ||| ||| Sbjct 38277636 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 38277695 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||||| | || |||| ||||||||| Sbjct 38277696 CAGCGCCTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCTTGGCAGACTACAAC 38277755 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||||||| | ||| |||| || | | ||||| || Sbjct 38277756 ATTCAGAAGGAGTCTACGCTCCACCTGGTTCTGCGCCTCCGAGGTGG 38277802 >seq5 Length=47252588 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| |||| ||| | Sbjct 6910032 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 6910091 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || |||||| | ||| ||| ||| Sbjct 6910092 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 6910151 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | || | || ||||||||| Sbjct 6910152 CAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTCGCTGACTACAAC 6910211 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 6910212 ATCCAGAAGGAGTCGACCCTCCACTTGGTG 6910241 >seq2 Length=49199997 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| |||| ||| | Sbjct 10739392 ATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 10739451 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || |||||| | ||| ||| ||| Sbjct 10739452 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 10739511 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | || | |||||||||||| Sbjct 10739512 CAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 10739571 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 10739572 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 10739601 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || ||| | || ||||| || || ||| | || ||| | Sbjct 10740304 ATGCAGATTTTTGTGAAGACTCTCACTGGCAAGACTATCACCCTTGAGGTAGAGTCCTCA 10740363 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| || ||| Sbjct 10740364 GACACAATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 10740423 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||||||||||||| Sbjct 10740424 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 10740483 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 10740484 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 10740513 >seq1 Length=42145699 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| |||| |||| || Sbjct 7134039 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 7134098 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || |||||| | ||| ||||||| Sbjct 7134099 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAG 7134158 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | || |||| ||||||||| Sbjct 7134159 CAGCGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACCCTGGCTGACTACAAC 7134218 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||| || | ||| ||||| Sbjct 7134219 ATCCAGAAGGAGAGCACCCTCCACCTGGTG 7134248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875161738193