Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq337 86.0 2e-12 seq14 86.0 2e-12 seq9 86.0 2e-12 >seq337 Length=135516 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 12670 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 12729 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 12730 GCTCTACTCCGC 12741 >seq14 Length=147140 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 93556 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 93615 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 93616 GCTCTACTCCGC 93627 >seq9 Length=58970307 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 2858750 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 2858691 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 2858690 GCTCTACTCCGC 2858679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181602473246694