Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq9 82.4 1e-10 >seq9 Length=58970307 Score = 82.4 bits (90), Expect = 1e-10 Identities = 119/164 (73%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 193433 TCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTC-AGGAATGGCCCAAAAAGGAA 193491 |||||| || || || |||| || || || ||| | ||| |||| | ||||||||| Sbjct 10263135 TCAGTT-CGCATTCCACAAATTGGAGACAAGTTTAGCAGTAGGCATGGAC-AAAAAGGAA 10263078 Query 193492 CTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAG 193551 || ||| |||| ||| ||||||| || ||||||| || | ||| || ||| | Sbjct 10263077 CTGTTGGGATGACTTACACACAAGAGGACATGCCATGGACGATTGAAGGCATCACACCTG 10263018 Query 193552 ATATTATTATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 |||||||| | |||||| || |||||||||| | ||||| ||| Sbjct 10263017 ATATTATTGTGAATCCACATGCTATTCCATCCCGTATGACTATT 10262974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635174924314360