Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq9 84.2 3e-11 >seq9 Length=58970307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 193035 CAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGT 193094 |||||||||||| ||| |||| ||| ||||||| || ||||||| || | | ||| Sbjct 10263087 CAAAAAGGAACTGTTGGGATGACTTACACACAAGAGGACATGCCATGGACGATTGAAGGC 10263028 Query 193095 ATGGTACCAGATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAA 193154 || ||| ||||||||| | |||||| || |||||| ||| | ||||| ||| || Sbjct 10263027 ATCACACCTGATATTATTGTGAATCCACATGCTATTCCATCCCGTATGACTATTGGACAG 10262968 Query 193155 ATTATTGCTACTGTTATGGGTAAA 193178 | |||| | ||||||||||| Sbjct 10262967 CTGATTGAGTGTATTATGGGTAAA 10262944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628528552312320