Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq9 237 1e-56 seq3 123 2e-22 seq2 102 6e-16 seq6 87.8 1e-11 >seq9 Length=58970307 Score = 237 bits (262), Expect = 1e-56 Identities = 697/1061 (66%), Gaps = 20/1061 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| ||||||||||| ||||| | ||||| || || |||||||| Sbjct 1844666 GCAGAGACATTCAGAATACCATTAGCATCGATGTCAAAGCATACAGTGATCTGAGGGACA 1844725 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || || ||||||| ||||| || | | |||| | || || ||| || || | Sbjct 1844726 CCCCTAGGAGCAGGGGGGATTCCAGAGAGCTCAAATTTCCCAAGGAGATTGTTGTCCCTG 1844785 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | || ||||| ||| ||||| || ||| || ||||| || || Sbjct 1844786 GTCCGGGTCCTCTCGCCCTCATAAACCTGGATCAACACACCAGGCTGGTTATCCGAGTAG 1844845 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || | || || ||| ||| || ||||| || ||||| || ||||| || Sbjct 1844846 GTGGAGAAGAC-CTGCTCTTTCTTGGTTGGAATGGTGGTGTTCCTTGGAATAAGGACAGT 1844904 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | || || || ||||| | ||||||||| || || || ||||| | |||| || Sbjct 1844905 CATGACTCCTCCGGCAGTTTCAAGACCAAGAGACAGTGGGGTCACATCGAGGAGGAGAAG 1844964 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | |||| || |||| | |||| ||| ||||| || |||| ||||| ||||| Sbjct 1844965 GTCCTGAACCTTCTCATTGCCCTCACCACTAAGGATAGCAGCCTGAACGGCAGCGCCATA 1845024 Query 281785 TGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 |||||||||||||||||||| | | || || |||| || |||||||| || | Sbjct 1845025 GGCAACAGCTTCATCAGGATTGATGCTCTTGCAA--AGTTCCTTTCCATTGAAGAAGTCC 1845082 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 || || || || || || || | || || || ||||| | |||| ||||| Sbjct 1845083 TGCAGCAGCTGCTGGACTTTGGGGATCCTAGTCGAACCACCAACAAGGACAACATCATGG 1845142 Query 281903 ACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGACCAG 281960 || ||| | ||||||| || | |||| | |||| | || || | || | | Sbjct 1845143 ACA-GTGCTCTTATCCATCTTGGCATCCCTCAGGCACTTCTCCACAGGCTCCATGCACTT 1845201 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 282020 | || || | ||| |||||| || || | ||||| || | ||| || ||| Sbjct 1845202 C-CTGAATAGGTCCATGTTAAGTTCCTCAAACCTGGCTCTTGTGATGGTGGAATAGAAAT 1845260 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 |||| || ||| | | |||||||| |||||||||||| || | | ||||| |||| | Sbjct 1845261 CAATGCCCTCGTAGAGAGAATCAATTTCAATCGTAGTCTGCGCTGTGGAAGAAAGTGTCC 1845320 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 282138 ||||| | ||||||| ||||| || |||| || || | | | || | | | Sbjct 1845321 TCTTAGCCCTCTCACATGAAGTCCTAAGCCTTCTCAAAGCCCTGG--GGTTCCCAGTGAT 1845378 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 282198 ||| | || | ||| | ||| || |||| ||| | | || | || || ||||| Sbjct 1845379 ATCCTTCTTGTTTTTCCGCTTAAACTCTTGGACAAAGTGGTTCACCAAGCGGTTGTCAAA 1845438 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 || || || || | | ||| | || | || || | || | || | || || || Sbjct 1845439 GTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTGGCCTTCACCTCAAATATACCCTCCTC 1845498 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 282318 || || | |||| ||||||| || |||||||| | ||||||||||| |||||| | Sbjct 1845499 AATAGTGAGGAGAGAAACATCAAAAGTGCCACCACCAAGGTCAAAAATAAGGACATTCTT 1845558 Query 282319 TTCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 || | | | ||| || ||||||||||| |||| |||||||||||||| || Sbjct 1845559 CTCACCAACACTAGTAGCTTTCTTGTCAAGACCATAGGCAATTGCAGCAGCAGTTGGCTC 1845618 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 ||| || || | || ||||| || || ||||| || ||||| ||||| || || || Sbjct 1845619 ATTGATGATACGCATGACATTGAGCCCGGCAATAACACCAGCATCCTTAGTTGCCTGCCT 1845678 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || ||||| ||||| || ||||||||||||| || |||| Sbjct 1845679 CTGGGAATCATTAAAGTAAGCAGGAACAGTAACCACAGCAT 1845719 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||| || || ||| ||||| ||| || ||| Sbjct 13464956 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATCCTCTCAACATCAAGGCCCGCA 13464897 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || ||||| || | || | ||| || ||||| || ||||||||| Sbjct 13464896 ATGCGGCCAGCATCCTTTGTGGCCTGACGCTGAGCATCATTGAAATAAGCTGGAACAGTA 13464837 Query 282464 ATAACGGC 282471 || || || Sbjct 13464836 ATCACTGC 13464829 >seq3 Length=50651951 Score = 123 bits (136), Expect = 2e-22 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 282332 |||||| ||| ||||| |||| ||||| || || |||||| | || | |||| Sbjct 41235689 ACATCAAAGGTACCACCGCCCAGGTCAAAGATGAGGACATTCTTCTCACCAACACTGGTA 41235748 Query 282333 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 | || ||||||||||| |||| ||||||||||||||| ||||| || || | || | Sbjct 41235749 GCCTTCTTGTCAAGACCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGCAGA 41235808 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 || ||||| |||||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 41235809 ACGTTAAGTCCAGCAATCACCCCAGCATCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 41235868 Query 282449 TATGCAGGAACAGTAATAACGGC 282471 || |||||||| || | ||| || Sbjct 41235869 TAGGCAGGAACGGTGACAACAGC 41235891 Score = 102 bits (112), Expect = 6e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | ||||||||| || | ||||||||||||||||| ||||| | | ||| Sbjct 5577287 TTCTTCTCGAAACCATACGCCAATGATGCAGCAGTTGGTTCATTTATAATACGAAGAACT 5577346 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | || || ||||| | || |||||||| || ||| |||||||||||||| || ||| Sbjct 5577347 TCCAGCCCTGCAATACGACCAGCATCTTTTGTTGCTGTCCTTTGTGAATCGTTGAAGTAT 5577406 Query 282452 GCAGGAACAGTAATAACGGCATCTGT 282477 || || ||||||| || || | ||| Sbjct 5577407 GCTGGGACAGTAACCACTGCTTTTGT 5577432 >seq2 Length=49199997 Score = 102 bits (112), Expect = 6e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || || |||||||| || ||||| ||| | ||| |||||| Sbjct 32025820 CCATAGGACAGAGCAGCTGCTGTCGGTTCATTGATGATTCTTTCAACCTCAAGGCCAGCA 32025761 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 |||| ||||||||||| ||||| || | || | ||| || || ||||| |||||||| Sbjct 32025760 ATTCGGCCTGCATCTTTTGTGGCCTGACGCTGAGCATCATTGAAGTATGCTGGAACAGTG 32025701 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 || || || | | || |||||||| ||||| |||||| | ||||| || Sbjct 32025700 ATCACTGCCTTCGAGACAGATTTTCCAAGGTAAGCTTCTGCTGTCTCCTTCATCTT 32025645 >seq6 Length=36014550 Score = 87.8 bits (96), Expect = 1e-11 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| || |||||||| || ||||||||||| ||||||||||||||||| ||| | || | Sbjct 4691821 TGAAAGCAAAAGAAGGCCGCATTAGAGGAAACTTGATGGGAAAGCGTGTTGATTTCTCAG 4691880 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATAT 432373 | ||||| ||||| || | ||||| ||||| Sbjct 4691881 CCCGTACTGTTATCACACCAGATCCAAATAT 4691911 Score = 87.8 bits (96), Expect = 1e-11 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| || |||||||| || ||||||||||| ||||||||||||||||| ||| | || | Sbjct 4699745 TGAAAGCAAAAGAAGGCCGCATTAGAGGAAACTTGATGGGAAAGCGTGTTGATTTCTCAG 4699804 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATAT 432373 | ||||| ||||| || | ||||| ||||| Sbjct 4699805 CCCGTACTGTTATCACACCAGATCCAAATAT 4699835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740613854724162