Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 seq4 84.2 2e-11 >seq5 Length=47252588 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 151105 ATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGC 151164 ||| ||||| ||||||| |||||||| || || | || |||||||| ||| | ||||| Sbjct 27669363 ATCTGCCAAGCCTTGAACACCTATGCCAATTGGCCTGTGACGCATATTTGATCTCTTTGC 27669422 Query 151165 AGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 151203 ||| |||| ||| ||| |||| |||||||||||| || Sbjct 27669423 AGTCTCAACAGGATAGTAATTAATATCAATAATTTTGTT 27669461 >seq4 Length=40407879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 151105 ATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGC 151164 ||| ||||| ||||||| |||||||| ||||| | || |||||||| ||| | ||||| Sbjct 4346222 ATCTGCCAAGCCTTGAACACCTATGCCAATGGGCCTGTGCCGCATATTTGATCTCTTTGC 4346163 Query 151165 AGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 151203 || |||| ||| ||| |||| |||||||||||| || Sbjct 4346162 GGTCTCAACAGGATAGTAATTAATATCAATAATTTTGTT 4346124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488541942008400