Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 8e-15 seq8 87.8 4e-12 seq6 86.0 1e-11 seq5 84.2 5e-11 seq1 84.2 5e-11 >seq7 Length=35964315 Score = 96.9 bits (106), Expect = 8e-15 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 110523 TGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAA 110582 ||||| ||| | | || || |||||| |||||| || ||||||||| |||| |||| Sbjct 14545821 TGCTTCCTTATCTGCATGAAAGATGATAGTATTGAGGGAATTTATGATACTCTCTCAGAA 14545880 Query 110583 ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTAT-TCACGTTCATGATATTCGCTC 110641 |||| | || ||| | |||||||||||||| | ||| |||| ||||||| | Sbjct 14545881 TGTGCTATGATAAGCAAATGCGCTGGAGGAATTGGTGTCTCA-ATTCACAATATTCGAGC 14545939 Query 110642 -AAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 | ||||| | ||| | | | || ||| |||| | |||| ||||||| ||| || Sbjct 14545940 TACTGGGAGCTACATTCG-AGGAACAAATGGTACTTCTAATGGAATTGTTCCTATGCTAC 14545998 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGG 110752 | || ||||| || |||||| ||||| |||||||| || |||||||| || Sbjct 14545999 GTGTTTTCAATGATACTGCATGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 14546053 >seq8 Length=40689132 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||||| |||||| |||||||| || || ||||||||||| |||| ||| Sbjct 26228380 GATTTTGTTCTTTTCAATCGGCAACCAAGTCTACACAAAATGTCTATTATGGGGCATCGT 26228321 Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 ||||| ||||| | | || ||||| || ||| | || | | | || || | Sbjct 26228320 ATCAAA--ATTATGCCCTACTCAACTTTTCGGTTGAATTTGTCTGTTACTTCACCATACA 26228263 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||| |||||||| || |||||||||||||||||||| || || || Sbjct 26228262 ATGCTGATTTTGACGGTGATGAAATGAATATGCATGTTCCCCAGTC 26228217 >seq6 Length=36014550 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/170 (73%), Gaps = 10/170 (6%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||||| |||||| |||||||| || |||||||||||||| |||| ||| Sbjct 4692338 GATTTTGTTCTTTTCAATCGGCAACCAAGCCTTCATAAAATGTCTATCATGGGGCATCGC 4692397 Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAA--TGTAAGTG-CTTGTACGCCTT 305438 ||||| ||||| | | || || || ||||| ||| || ||| | || | Sbjct 4692398 ATCAAA--ATTATGCCCTACTCAACTTTCCGGTTAAACTTGTCTGTCACTT---CACCAT 4692452 Query 305439 ATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||| ||||||||||| ||||| |||||||||||||| || || ||| Sbjct 4692453 ACAATGCTGATTTTGATGGGGATGAGATGAATATGCATGTCCCCCAGTCA 4692502 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/170 (73%), Gaps = 10/170 (6%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||||| |||||| |||||||| || |||||||||||||| |||| ||| Sbjct 4700262 GATTTTGTTCTTTTCAATCGGCAACCAAGTCTTCATAAAATGTCTATCATGGGGCATCGC 4700321 Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAA--TGTAAGTG-CTTGTACGCCTT 305438 ||||| ||||| | | || || || ||||| ||| || ||| | || | Sbjct 4700322 ATCAAA--ATTATGCCCTACTCAACTTTCCGGTTAAACTTGTCTGTCACTT---CACCAT 4700376 Query 305439 ATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||| ||||||||||| ||||| |||||||||||||| || || ||| Sbjct 4700377 ACAATGCTGATTTTGATGGGGATGAGATGAATATGCATGTCCCCCAGTCA 4700426 >seq5 Length=47252588 Score = 84.2 bits (92), Expect = 5e-11 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 110523 TGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAA 110582 ||||| ||| | | || || |||||| |||||| || ||||||||| |||| |||| Sbjct 3403115 TGCTTCCTTATCTGCATGAAAGATGATAGTATTGAGGGAATTTATGATACTCTCTCAGAA 3403174 Query 110583 ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTAT-TCACGTTCATGATATTCGCTC 110641 |||| || ||| | |||||||||||||| | ||| |||| | ||||| | Sbjct 3403175 TATGCTACGATAAGCAAATGCGCTGGAGGAATTGGTGTCTCA-ATTCACAACATTCGAGC 3403233 Query 110642 -AAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 | ||||| | ||| | | | || ||| |||| | |||| ||||||| ||| || Sbjct 3403234 TACTGGGAGCTACATTCG-AGGAACAAATGGTACTTCTAATGGAATTGTTCCTATGCTAC 3403292 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGG 110752 | || ||||| || ||||| ||||| |||||||| || |||||||| || Sbjct 3403293 GTGTTTTCAATGATACTGCCTGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 3403347 >seq1 Length=42145699 Score = 84.2 bits (92), Expect = 5e-11 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 110523 TGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAA 110582 ||||| ||| | | || || |||||| |||||| || ||||||||| |||| ||| Sbjct 40778029 TGCTTCCTTATCTGCATGAAAGATGATAGTATTGAGGGAATTTATGATACTCTCTCGGAA 40778088 Query 110583 ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTAT-TCACGTTCATGATATTCGCTC 110641 |||| | || ||| | |||||||||||||| | ||| |||| | ||||| | Sbjct 40778089 TGTGCTGTGATAAGCAAATGCGCTGGAGGAATTGGTGTCTCA-ATTCACAACATTCGAGC 40778147 Query 110642 -AAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 | ||||| | ||| | | | || ||| |||| | |||| ||||||| ||| || Sbjct 40778148 TACTGGGAGCTACATTCG-AGGAACAAATGGTACTTCTAATGGAATTGTTCCTATGCTAC 40778206 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGG 110752 | || ||||| || ||||| ||||| |||||||| || |||||||| || Sbjct 40778207 GTGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 40778261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186807675564857