Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 7e-16 seq2 89.7 3e-13 seq4 87.8 1e-12 >seq1 Length=42145699 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | ||||| ||| || |||||||| || || || |||||||| | Sbjct 7122713 CCACCCCTCAGACGGAGCACCAGATGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGCA 7122654 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | ||||||||| || | || Sbjct 7122653 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGG 7122594 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | ||| | ||||||| || ||||| Sbjct 7122593 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 7122535 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||||||||| Sbjct 7122534 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7122487 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | ||||| ||| || |||||||| || || || |||||||| | Sbjct 7135405 CCACCCCTCAGACGGAGCACCAGATGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGCA 7135346 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| || | ||||||||| || | || Sbjct 7135345 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGGG 7135286 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | ||| | |||||| || ||||| Sbjct 7135285 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTCCAC 7135227 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 7135226 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7135179 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||||| || || |||||||| || || || |||||||| | Sbjct 7122485 CCTCCCCTGAGACGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCAGCA 7122426 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | || || |||||||| |||| ||||||||| || | || Sbjct 7122425 AGTGTGCGCCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGG 7122366 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | ||| | |||||| || ||||| Sbjct 7122365 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTCCAC 7122307 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||||||||| Sbjct 7122306 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7122259 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||||| || || |||||||| || || |||||||| || | Sbjct 7135177 CCTCCCCTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 7135118 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| || | || || || ||||| || | | |||||| ||| | || Sbjct 7135117 AGGGTGCGTCCGTCCTCAAGCTGCTTGCCTGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 7135058 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| ||| | ||||||| || ||||| Sbjct 7135057 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCGATGGTGTCGGAAGACTCCAC 7134999 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||||||||| Sbjct 7134998 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7134951 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||||| || || |||||||| || || || |||||||| | Sbjct 7122029 CCTCCCCTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCAGCA 7121970 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || |||||||| || | | |||||| || | || Sbjct 7121969 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 7121910 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | ||| | ||||||| || ||||| Sbjct 7121909 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 7121851 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||||| || || || | || || || ||||||||||| Sbjct 7121850 CTCAAGGGTGATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 7121803 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||||| || || |||||||| || || ||||| || || | Sbjct 7122257 CCTCCCCTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTATAGTCAGCC 7122198 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| || | || || || ||||| || | | |||||| || | || Sbjct 7122197 AGGGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 7122138 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| | | ||| | ||||||| |||||||| Sbjct 7122137 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAAGATTCCAC 7122079 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||||||||| Sbjct 7122078 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7122031 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||||| || || |||||||| || || |||||||| || | Sbjct 7134265 CCTCCCCTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 7134206 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || |||||||| || | ||||||||||| | || Sbjct 7134205 AGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGATCCGGGGGA 7134146 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | | || | ||| | |||||| || ||||| Sbjct 7134145 ATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCAC 7134087 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 7134086 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 7134039 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||||| ||| || |||||||| || || ||||| || || | Sbjct 7134493 CCTCCCCTGAGACGGAGCACCAGATGGAGGGTGCTCTCCTTCTGGATGTTATAGTCAGCC 7134434 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | || || || ||||| || | | |||||| || | || Sbjct 7134433 AGGGTGCGTCCATCCTCAAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 7134374 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | ||| | ||||||| || ||||| Sbjct 7134373 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 7134315 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || || |||||||||||||| Sbjct 7134314 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 7134267 >seq2 Length=49199997 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || ||||||||||||| ||| ||||| |||| || Sbjct 39557197 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTC 39557256 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| || || | |||||||| || |||| | ||| || ||||| Sbjct 39557257 GAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTG 39557316 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | | || | ||| | ||||||||| ||||| || | |||||||| | Sbjct 39557317 GATCTT-GGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATCGTCT 39557375 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||| || || ||||||||||| Sbjct 39557376 TCCCCGTCAGCGTCTTCACGAAGATCTGCAT 39557406 >seq4 Length=40407879 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | ||||| || |||||| ||| || ||||||||||| || | Sbjct 37851365 ACCACCACGCAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAGTCAGC 37851424 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || || |||||||| || | ||||||||| || | || Sbjct 37851425 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGG 37851484 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || ||| || | ||| | |||||| || |||| Sbjct 37851485 GATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATGGTGTCAGAAGACTCCA 37851543 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || ||||||||||||||| Sbjct 37851544 CCTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATCTGCATA 37851593 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| ||| || |||||||||||||| | Sbjct 37850910 CCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGTATGTTGTAATCCGCC 37850969 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || |||| || || ||||| || || | ||||||||| ||| | || Sbjct 37850970 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 37851029 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || || ||| ||| || | ||| | |||||| || ||||| Sbjct 37851030 ATGCCCTCCTTATCCTGGATCTTCGCCTTC-ACGTTGTCGATGGTGTCAGAAGACTCCAC 37851088 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || ||||||||||||||| Sbjct 37851089 CTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATCTGCATA 37851137 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || || ||| ||| || || ||||| || |||| Sbjct 38277574 CCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCA 38277515 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || ||||| || || || | |||||||| ||| | || Sbjct 38277514 AGAGTCCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGA 38277455 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||||| || || ||| || |||| || | |||||| || || || Sbjct 38277454 ATGCCTTCCTTATCTTGAATCTTTGCCTTCACGTTATCAATTGTGTCGGAAGACTCAACT 38277395 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||| || || || || || || || |||||||||||||| Sbjct 38277394 TCAAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 38277348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702649951040