Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq337 574 1e-159 seq14 574 1e-159 seq7 316 6e-82 >seq337 Length=135516 Score = 574 bits (636), Expect = 1e-159 Identities = 725/984 (74%), Gaps = 14/984 (1%) Strand=Plus/Minus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 1620 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 1561 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | || | || ||||| || ||||| || ||||| ||||| Sbjct 1560 CC-TACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGT 1502 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | |||||||||||||| || || Sbjct 1501 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 1442 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || || | |||| | | || || |||||| | || || |||||||||||| Sbjct 1441 TTCTGGTGCTATTATTCCTACTTCTGCG--GCGATCGGATTGCATTTTTACCCAATTTGG 1384 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 |||||| || ||||||||||| | ||||| || || || | | || | || | Sbjct 1383 GAAGCTGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 1324 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 |||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 1323 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 1264 Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 1263 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT- 1205 Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | | || || ||||||| || || ||||| |||| ||||||||| || || || Sbjct 1204 TTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATC 1145 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||||| ||| | |||||||| || || || ||||| || ||||| || || Sbjct 1144 TGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATT 1085 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||| | ||||| |||||||||||||| || || ||||||||||| ||||| ||||| Sbjct 1084 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 1025 Query 20107 GCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAG--AACTATGG 20163 | || || || | | ||| | | || || |||||| | || ||| | || | || Sbjct 1024 CTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGA--GTCTGCTAATGAGGG 968 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 |||||| ||||| |||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct 967 TTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGG 908 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 || || ||||||||||| ||| ||||||||| |||||| ||||||||||| | || Sbjct 907 TCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGC 848 Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 ||| ||||| || |||||||| |||||| |||| || || || ||| ||||| || || Sbjct 847 TGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAA 788 Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATAC 20403 || || || ||||| || ||||| || | | || | | ||||| || ||| |||| Sbjct 787 CCTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATAC 728 Query 20404 TTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGC 20463 ||||||||| || |||| ||||||||||| || | || || ||||| ||||| ||||| Sbjct 727 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 668 Query 20464 TCATAACTTCCCACTTGACCTTGC 20487 ||| |||||||| || ||||| || Sbjct 667 TCACAACTTCCCTCTAGACCTAGC 644 >seq14 Length=147140 Score = 574 bits (636), Expect = 1e-159 Identities = 725/984 (74%), Gaps = 14/984 (1%) Strand=Plus/Minus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 81965 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 81906 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | || | || ||||| || ||||| || ||||| ||||| Sbjct 81905 CC-TACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGT 81847 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | |||||||||||||| || || Sbjct 81846 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 81787 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || || | |||| | | || || |||||| | || || |||||||||||| Sbjct 81786 TTCTGGTGCTATTATTCCTACTTCTGCG--GCGATCGGATTGCATTTTTACCCAATTTGG 81729 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 |||||| || ||||||||||| | ||||| || || || | | || | || | Sbjct 81728 GAAGCTGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 81669 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 |||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 81668 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 81609 Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 81608 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT- 81550 Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | | || || ||||||| || || ||||| |||| ||||||||| || || || Sbjct 81549 TTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATC 81490 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||||| ||| | |||||||| || || || ||||| || ||||| || || Sbjct 81489 TGGTACTTTCAACTTTATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATT 81430 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||| | ||||| |||||||||||||| || || ||||||||||| ||||| ||||| Sbjct 81429 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 81370 Query 20107 GCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAG--AACTATGG 20163 | || || || | | ||| | | || || |||||| | || ||| | || | || Sbjct 81369 CTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGA--GTCTGCTAATGAGGG 81313 Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 |||||| ||||| |||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct 81312 TTACAAATTTGGTCAAGAAGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGG 81253 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 || || ||||||||||| ||| ||||||||| |||||| ||||||||||| | || Sbjct 81252 TCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGC 81193 Query 20284 TGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 20343 ||| ||||| || |||||||| |||||| |||| || || || ||| ||||| || || Sbjct 81192 TGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAA 81133 Query 20344 TCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATAC 20403 || || || ||||| || ||||| || | | || | | ||||| || ||| |||| Sbjct 81132 CCTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATAC 81073 Query 20404 TTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGC 20463 ||||||||| || |||| ||||||||||| || | || || ||||| ||||| ||||| Sbjct 81072 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 81013 Query 20464 TCATAACTTCCCACTTGACCTTGC 20487 ||| |||||||| || ||||| || Sbjct 81012 TCACAACTTCCCTCTAGACCTAGC 80989 >seq7 Length=35964315 Score = 316 bits (350), Expect = 6e-82 Identities = 346/455 (76%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 20036 ATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCG 20095 ||||| || || |||||| | ||||| |||||||||||||| || || ||||||||||| Sbjct 24459263 ATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCT 24459322 Query 20096 ATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCA 20154 ||||| ||||| | || || | | | ||| | | || || |||||| | || ||| Sbjct 24459323 ATGCATGGTTCCTTGGTAACCTA-TAGTTTGATCAGGGAAACCACTGAAAATGA--GTCT 24459379 Query 20155 G--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCAT 20212 | || | |||||||| ||||| |||||||||| || |||||||| || || |||||| Sbjct 24459380 GCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTGCTCAT 24459439 Query 20213 GGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACAC 20272 ||||| ||||| || || ||||||||||| ||| ||||||||| ||||| ||||| Sbjct 24459440 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTTTACAC 24459499 Query 20273 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 20332 |||||| | ||||| ||||| || |||||||| |||||| |||| || || || ||| Sbjct 24459500 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24459559 Query 20333 ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGT 20392 ||||| || || || || |||||||| || ||||| || | | || | | ||||| Sbjct 24459560 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGC 24459619 Query 20393 GTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCAT 20452 || ||| ||||||||||||| || ||| ||||||||||| || | || || ||||| Sbjct 24459620 GTTATTAATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTAATGCAC 24459679 Query 20453 GAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||| |||||||| |||||||| || ||||| || Sbjct 24459680 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 24459714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828204405746