Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 seq7 96.9 5e-15 seq4 95.1 2e-14 seq1 93.3 6e-14 seq2 84.2 3e-11 >seq5 Length=47252588 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| |||| | | ||| |||| ||| ||| Sbjct 27674630 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACGCGTAACATAGGAACAATTCCA 27674689 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||||||||| ||| ||||| || | || |||||||| || || Sbjct 27674690 TTCGATGTTCCATTTGTTCCTCGAATGTAACTACCAGTAGCACGAATATTGTGAACCGAG 27674749 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 27674750 ACACCAATTCCTCCAGCTGATTTGCTTATGACAGCACATTCCTTCAGAGTTTCATAGATT 27674809 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 27674810 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 27674850 >seq7 Length=35964315 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | ||||| |||| ||| || Sbjct 14546039 TCCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCC 14545980 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| ||||||||||||| ||| || || || | || |||||||| ||| || Sbjct 14545979 ATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATATTGTGAATTGA 14545920 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | |||||| | | || ||||| || Sbjct 14545919 GACACCAATTCCTCCAGCGCATTTGCTTATCATAGCACATTCTGAGAGAGTATCATAAAT 14545860 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||||||| ||||| | ||| || |||||| Sbjct 14545859 TCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 14545817 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | |||||| | ||| | || | ||||| |||| ||| || Sbjct 3450176 TCCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCC 3450235 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| ||||||||||||| ||| || || || | || ||||| || ||| || Sbjct 3450236 ATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATGTTGGGAATTGA 3450295 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAACGTTTCAATGTGTCAT 69925 | ||| |||||||| || ||||| | ||| |||||| | | || |||| Sbjct 3450296 GACACCAATTCCTCCAGCGCATTT----GCTTATCGCAGCACATTCTGAGAGAGTATCAT 3450351 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || ||||| || ||||||||| ||||| | ||| || |||||| Sbjct 3450352 AAATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 3450398 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 23911745 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 23911804 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 23911805 GCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 23911863 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 23911864 AGATGCCCTCAAC 23911876 >seq4 Length=40407879 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 69795 CATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCG 69854 ||| |||| ||| |||||||| | ||||||||||| ||| |||||||| | || || Sbjct 4344590 CATAGGAACAATTCCATTAGACGTTCCATTTGTTCCTCGAATGTAACTTCCAGTAGCACG 4344531 Query 69855 AATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTT 69914 |||||| || || | ||| |||||||| || ||| || | |||||| || Sbjct 4344530 AATATTGTGAACTGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCCTT 4344471 Query 69915 CAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || || || || ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 4344470 CAGAGTATCGTAAATTCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 4344414 >seq1 Length=42145699 Score = 93.3 bits (102), Expect = 6e-14 Identities = 157/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | |||||| | ||| | || | ||||| |||| ||| || Sbjct 40778247 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCC 40778188 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| ||||||||||||| ||| || || || | || ||||| || ||| || Sbjct 40778187 ATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATGTTGTGAATTGA 40778128 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTC---AATGTGTCATA 69926 | ||| |||||||| || ||| || | |||||| || | | || ||||| Sbjct 40778127 GACACCAATTCCTCCAGCGCATTTGCTTATCACAGCACA---TTCCGAGAGAGTATCATA 40778071 Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || ||||| || ||||||||| ||||| | ||| || |||||| Sbjct 40778070 AATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 40778025 >seq2 Length=49199997 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/227 (69%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | |||||| | ||| | || | ||||| |||| ||| || Sbjct 20643119 TCCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCC 20643060 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| ||||||||||||| ||| || || | || ||||| || ||| || Sbjct 20643059 ATTAGAAGTACCATTTGTTCCTCGAATGTAGCTCGTAGTAGCTCGAATGTTGTGAATTGA 20643000 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAACGTTTCAATGTGTCAT 69925 | ||| |||||||| || ||||| | ||| |||||| | | || |||| Sbjct 20642999 GACACCAATTCCTCCAGCGCATTT----GCTTATCGCAGCACATTCTGAGAGAGTATCAT 20642944 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || ||||| || ||||||||| ||||| | ||| || |||||| Sbjct 20642943 AAATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 20642897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905906396680