Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 6e-11 >seq2 Length=49199997 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||||||| ||||| || || || || || |||||||| | || | |||||| Sbjct 46940063 CAGTTTTACGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGACATG 46940122 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 ||||| || || || || ||||| || || |||| |||||||| |||||||| || Sbjct 46940123 GGACTTGGTGTTCCATTCAACATTGCATCGTACTCTCTTCTCACGTACATGATTGCTCAA 46940182 Query 41199 GTT 41201 ||| Sbjct 46940183 GTT 46940185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454367573685