Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9 118 9e-22 seq4 98.7 8e-16 seq1 98.7 8e-16 seq7 87.8 2e-12 seq2 86.0 5e-12 >seq9 Length=58970307 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | ||| || || || || || ||||||||| Sbjct 15032459 GCCGCCGCGGAGGCGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 15032518 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || |||||||||| || ||||| || || ||| | ||||| ||||| || |||||||| Sbjct 15032519 CAGCGTGCGCTCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCCGGCGG 15032578 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || || |||| |||| | | | || ||||| | || || || Sbjct 15032579 GATCCCCTCCTTGTCCTGGACCTTGGCCTTCACGTTCGCCACCGTGTCCGACGCCTCCAC 15032638 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||||||||| ||||| Sbjct 15032639 CTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 15032686 >seq4 Length=40407879 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCG-CTCGTCTTCGAGCTGTTTACC 27109 || || || || || |||||||||||| | | | || | | || || ||||| || || Sbjct 37852080 GTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCCATCCTCAAGCTGCTTGCC 37852139 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 37852140 GGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 37852199 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 37852200 CACGTTGTCGATCGTGTCAGAGGACTCAACCTCAAGCGTGATGGTCTTGCCAGTGAGGGT 37852259 Query 27230 TTTCACAAAGATTTGCATAGCTGCTAAAAATT 27261 ||||||||||| ||||| |||| ||| ||| Sbjct 37852260 CTTCACAAAGATCTGCAT--CTGC-AAACATT 37852288 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || || | |||| |||| || | |||||| || || ||||| |||||||| Sbjct 38277803 GCCACCTCGGAGGCGCAGAACCAGGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGC 38277744 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | |||| |||| || ||||| ||||| || | || || ||||| || |||||||| Sbjct 38277743 CAAGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGCGG 38277684 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| |||| | || | ||||| | | || || Sbjct 38277683 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCGGAAGACTCGAC 38277624 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || ||||| || ||||||||||| ||||| Sbjct 38277623 CTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 38277576 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| |||||||||||| | | | || | || || ||||| || || Sbjct 37851624 GTCGACTCCTTTTGGATATTGTAGTCGGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCA 37851683 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 37851684 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 37851743 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || | || || | ||||| || ||||| Sbjct 37851744 ACGTTGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTAAGAGTC 37851803 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 37851804 TTGACAAAGATCTGCATA 37851821 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || ||||| || ||| Sbjct 37851396 GTGGACTCCTTCTGTATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 37851455 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 37851456 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 37851515 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || | || || | ||||| || ||||| Sbjct 37851516 ACGTTGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTAAGAGTC 37851575 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 37851576 TTGACAAAGATCTGCATA 37851593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | | || | || || ||||| || || Sbjct 37851852 GTGGACTCCTTCTGTATGTTGTAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCA 37851911 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 37851912 GCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 37851971 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || ||||| || | ||||| || || || Sbjct 37851972 ACGTTGTCAATGGTGTCAGACGACTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTC 37852031 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||| || |||||| Sbjct 37852032 TTCACAAATATCTGCATA 37852049 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || || | |||| | || || ||||| || ||| Sbjct 37850940 GTGGACTCCTTCTGTATGTTGTAATCCGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCG 37850999 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| ||||| |||||| ||| Sbjct 37851000 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTC 37851059 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || | || || | ||||| || ||||| Sbjct 37851060 ACGTTGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTAAGAGTC 37851119 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 37851120 TTGACAAAGATCTGCATA 37851137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| |||||||||||| | | | || | || || ||||| || || Sbjct 37851168 GTCGACTCCTTTTGGATATTGTAGTCGGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCA 37851227 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 37851228 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 37851287 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || | || || | ||||| || || || Sbjct 37851288 ACATTGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTAAGGGTC 37851347 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 37851348 TTGACAAAGATCTGCATA 37851365 >seq1 Length=42145699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | ||||| ||||| || |||||||| ||| | Sbjct 35309467 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCGGCC 35309526 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| |||| || ||||| || || || | ||||| ||||| || ||||| || Sbjct 35309527 AATGTGCGCCCGTCCTCCAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCCGGTGGG 35309586 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | || | ||||| | | || ||| Sbjct 35309587 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCAATTGTGTCAGAGCTCTCGACT 35309646 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| || || || || || ||||||||||| ||||| Sbjct 35309647 TCCAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 35309693 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| || | |||| | || || || || || ||| Sbjct 7135603 GTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGTTGCTTGCCG 7135544 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || ||||| || | |||||| || || ||||||| ||| Sbjct 7135543 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 7135484 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||||| || | ||| || | ||||| |||| ||| Sbjct 7135483 ACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTC 7135424 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 7135423 TTCACGAATATCTGCAT 7135407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || || ||||| || | |||| |||| || ||||| || |||||| | Sbjct 7134913 TCCTTCTGGATGTTATAGTCAGCCAGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAG 7134854 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||| | ||| || ||||| || | || || || || ||||||| |||| | | Sbjct 7134853 ATGAGCCTCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTG 7134794 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | | ||||| || | ||| || | ||||| |||| ||| |||||| Sbjct 7134793 TCGATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTGCCAGTCAAAGTCTTCACA 7134734 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 7134733 AAGATCTGCAT 7134723 >seq7 Length=35964315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| || ||||| || ||| Sbjct 30598800 GTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCG 30598741 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || ||||| || | ||||| ||||| ||||||| ||| Sbjct 30598740 GCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 30598681 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 30598680 ACATTGTCAATGGTGTCAGACGACTCTACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 30598621 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 30598620 TTCACAAAGATCTGCATA 30598603 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || | | |||| |||| || ||||| || || Sbjct 30598572 GTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 30598513 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || |||||||| ||||| || | ||||| || || ||||||| ||| Sbjct 30598512 GCGAAGATAAGGCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTC 30598453 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || || || || | || || | ||||| ||||| || Sbjct 30598452 ACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 30598393 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 30598392 TTCACAAAGATTTGCAT 30598376 >seq2 Length=49199997 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || ||||| || || Sbjct 10740500 GTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 10740441 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || || || || | ||||| || || |||||| ||| Sbjct 10740440 GCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 10740381 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| || || || || || || |||| ||||| || ||||| Sbjct 10740380 ACATTGTCGATTGTGTCTGAGGACTCTACCTCAAGGGTGATAGTCTTGCCAGTGAGAGTC 10740321 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 10740320 TTCACAAAAATCTGCAT 10740304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932654714744