Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 114 2e-20 seq4 114 2e-20 >seq7 Length=35964315 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 23911760 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 23911819 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 23911820 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCA 23911879 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 23911880 GGCGAAGGCGACGAGGCGCTCGGCGAAG 23911907 >seq4 Length=40407879 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 10866102 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 10866161 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 10866162 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATTCCCTCGACGCA 10866221 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || ||||| | || || ||||||||| Sbjct 10866222 GGCGAACGCGACGAGTCGCTCGGCGAAG 10866249 Score = 114 bits (126), Expect = 2e-20 Identities = 194/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | || ||| | ||| || | | |||||||| ||| Sbjct 38499766 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 38499707 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | ||| ||||| | ||||| ||||||||||| || | | ||| || | Sbjct 38499706 ATAACAATAATTCCAGTGTTTCCCTCAAAACCATCCATCTCAGTCAACAGTTGGTTGAGA 38499647 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 ||||| || || ||||||||| | | ||| | || | |||| | || || ||| Sbjct 38499646 GTTTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAGCA 38499587 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||||| || || || || || ||| || ||| | | || ||||| Sbjct 38499586 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCA 38499527 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| || ||||| ||||||||||||||||||||||| Sbjct 38499526 CGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAA 38499486 Score = 109 bits (120), Expect = 7e-19 Identities = 216/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||||||||||||||| || | | || ||||| || || || ||||| || || | Sbjct 39891112 CAAAGCCATCCATCTCAGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACCAC 39891171 Query 11598 G-CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | ||||||| || ||| | || || |||||||||||||| ||||||||||| Sbjct 39891172 CACCGAGC-CCAGCACCACGCTGCCTCCCGACGGCATCAATCTCATCGATGAAGACAATG 39891230 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | ||| | || ||||| ||||| ||||| ||||| ||||| Sbjct 39891231 CAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCGCGCACCCTGGATGCACCGACACCG 39891290 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || || | ||| || || | | || | ||| || ||| || || | || || Sbjct 39891291 ACGAAGAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAAAGGCACGCCAGCCTCTCCG 39891350 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 |||| ||| || || |||||||| || || || || ||| ||| |||| || || Sbjct 39891351 GCGACGGCACGCGCCAGGAGGGTTTTACCTGTCCCAGGCGGACCGACGAGGAGACATCCC 39891410 Query 11837 CGGGGGATCTTGGCACC 11853 ||||||||||||||| Sbjct 39891411 TTGGGGATCTTGGCACC 39891427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029354415200