Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 163 4e-35 seq7 156 5e-33 >seq4 Length=40407879 Score = 163 bits (180), Expect = 4e-35 Identities = 318/455 (70%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||||||||| || | || ||| |||||| Sbjct 10865803 TAGTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCATC 10865862 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | ||||| ||||| | ||| | || | || |||| || | |||| || || Sbjct 10865863 CAGTCAAAGGGGTTGGCGGCGTTGTACATCTTCTTGCAC-CCGAGAGCCATGAGCAGGCG 10865921 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| | || |||||| |||| ||| | || Sbjct 10865922 GTCTGCGACGAACTCGATGTACTGGCTCATTAGCGCGCCGTTCATGCCGACGAGCGCGAC 10865981 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| ||| | ||| ||||| || || || ||||| || Sbjct 10865982 G-GGGAGCGCGTCGCAGACAAACTCTCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 10866040 Query 129966 GAATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAA 130019 | | | | ||| || | || | | |||| | | ||| | || ||| |||| | | Sbjct 10866041 GGACGCGGGGCTC-GT-CGAGCT-TGCTGCGGAGGAGGTCGTAGAGGAGG--CACG-CGA 10866094 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| || |||||||| ||||||||||| || || |||||| || || |||| Sbjct 10866095 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 10866154 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| ||||||||||| | |||||| || || || || ||||| ||||||||||| |||| Sbjct 10866155 TGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATTCCCT 10866214 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || || |||||||| | ||| ||||| || ||| Sbjct 10866215 CGACGCAGGCGAACGCGACGAGTCGCTCGGCGAAG 10866249 Score = 131 bits (144), Expect = 2e-25 Identities = 283/418 (68%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 || |||| || |||||||| | ||||| || || || || ||| || | |||| Sbjct 39891012 ACAGTGACCTGCCGATCAAACCTTCCTGGACGCAGAAGCGCAGAGTCCAGCACATCAGGC 39891071 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| ||||| |||| ||| | || || | | | |||||||||||||||||||| Sbjct 39891072 CTGTTGGTCGCAGCGAGGACGATGACACCACTGTTGCCGGCAAAGCCATCCATCTCAGTC 39891131 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-GGCATACCACCCGCACTGCG 14229 ||||| || || ||||| || || | || || || || | | | || |||| || Sbjct 39891132 AAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACG 39891190 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | |||||||| ||||| ||||||||||| || || || || || | ||| Sbjct 39891191 CTGCCTCCCGACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGC 39891250 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || |||| || ||||| || ||||||||||| || || | ||| || || | Sbjct 39891251 CTTCTCGAAGAGGTCGCGCACCCTGGATGCACCGACACCGACGAAGAGCTCGACGAACTC 39891310 Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 || |||| || || ||| || ||| || || || |||| ||| || || ||||| Sbjct 39891311 GGACGCGGCGCAGGAGAAGAAAGGCACGCCAGCCTCTCCGGCGACGGCACGCGCCAGGAG 39891370 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 ||| || || ||||| || || |||| | | || | | | |||||| ||||||| Sbjct 39891371 GGTTTTACCTGTCCCAGGCGGACCGACGAGGA-GACATCCCTTGGGGATCTTGGCACC 39891427 Score = 114 bits (126), Expect = 2e-20 Identities = 372/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 13865 GTGAT-CGTTCCGTCGCCGTCACGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGC 13923 ||||| || ||| | |||| ||| | ||| ||||||| ||| || | |||||| || Sbjct 8634749 GTGATGCGGTCCTT-GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGC 8634807 Query 13924 CAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTC 13983 | |||||| || ||| || | || || | || | || ||| ||| || Sbjct 8634808 GAGGTCGGCGCCGCTGAACCCGGGGGTGCGCATGGCCACCACGCTGAGCGACACGTCCGG 8634867 Query 13984 AGCCAACTTCTTGTCTCGGGC-GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGG 14042 ||| |||||||| | | || ||| || | | |||| ||| || |||||||| || Sbjct 8634868 GTCCAGCTTCTTGT-TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGG 8634926 Query 14043 GTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGA 14102 | || ||| ||| || || || ||||| || |||||||| || ||| | || |||| Sbjct 8634927 GGAGCCCGACGCTGACCTGGCGGTCGAAGCGGCCGGGGCGGAGCAGCGCGGCATCGAGGA 8634986 Query 14103 TATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCA 14162 | || ||||| || || ||||| || | || ||| | ||| | || || |||| Sbjct 8634987 TCTCCGGCCGGTTGGTGGCGGCGATCACGATGACGCCGCTGTCGCCGGCGAACCCGTCCA 8635046 Query 14163 TCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CC 14220 |||| |||| || || || | || || || | ||||| ||| | || | | || Sbjct 8635047 TCTCCGTCAGCAGCTGGTTCAGCGTCTGCTCCCTCTCATCGTTCCC--GCCGCCGATGCC 8635104 Query 14221 CGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT 14280 || | ||| || ||||||||||| | || |||||||| |||| || || || Sbjct 8635105 CGTCCCGCGCTGGCGGCCGACGGCGTCGACCTCGTCGATGAAGACGAGGCACGGCGCGTT 8635164 Query 14281 TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTC 14340 || ||| | |||| || ||||| | | || || || || || |||||||| Sbjct 8635165 CTCCTTGGCCTTGTTGAAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACGAACATCTC 8635224 Query 14341 CACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTC 14399 | || | || | |||| || | || |||||| ||| | || ||||||||||| Sbjct 8635225 GATGAACTCGGAGCCGGA-CAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCT 8635283 Query 14400 GGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || |||||||||||||| || Sbjct 8635284 TCGCCAGCAGCGTCTTCCCCGTCCCCGG 8635311 Score = 114 bits (126), Expect = 2e-20 Identities = 247/364 (68%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| ||||||||||||||||| ||||| |||| ||||| || | ||||||||| || Sbjct 38499682 TCAAAACCATCCATCTCAGTCAACAGTTGGTTGAGAGTTTGCTCCCTTTCATCATTTCCA 38499623 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | ||| | || | |||| ||||||| || ||||||||||| | || || || Sbjct 38499622 CCACCAATACCTGTACCTCTTTGCCTACCGACAGCATCAATTTCATCAACAAACACTATG 38499563 Query 14270 CATGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || ||| || ||| ||| ||| | ||| || ||||| ||||| ||||| Sbjct 38499562 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACC 38499504 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCAC 14387 ||||||||||||||||| | | | | ||| |||| || || || || || || | Sbjct 38499503 AACAAACATCTCCACAAACTCAGAGCCTGAA-ATTGAGAAAAATGGCACACCAGCCTCTC 38499445 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCAC 14447 ||||||| || ||| || | || || || || || ||| || | ||||| ||| Sbjct 38499444 CCGCGATTGCCTTGGCAAGCAAAGTTTTACCAGTTCCAGGTGGACCAACAAGAAGAACAC 38499385 Query 14448 CACGTGGGATCCTGGCACCACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507 | || || | |||||| || | | | |||||||| || | ||| || || | Sbjct 38499384 CTTTAGGAATGCGAGCACCAACAGCAGTGAACCTTTCAGGTTTCTTCAAGAACTCGACCA 38499325 Query 14508 TTTC 14511 ||| Sbjct 38499324 CTTC 38499321 >seq7 Length=35964315 Score = 156 bits (172), Expect = 5e-33 Identities = 315/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 23911461 TACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 23911520 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || |||||||| ||| | || | |||| | ||| | |||| || || Sbjct 23911521 CAGTCGAATGGGTTGGCGACGTTGTACATCTTCTGGTGCCCCAG-CGCCATGAGCAGGCG 23911579 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| | || |||||| |||| ||| | || Sbjct 23911580 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATTCCGACGAGCGCGAC 23911639 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| | ||| ||||| || || || ||||| || Sbjct 23911640 G-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 23911698 Query 129966 GAATG--GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | | | ||| | || | | |||| | | ||| | || ||| || ||| || Sbjct 23911699 GGACGCGGCCCTCGT-CGAGCT-TGCTGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 23911753 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || |||||| |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 23911754 GTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 23911813 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 23911814 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 23911873 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | ||| ||||| || ||| Sbjct 23911874 AACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 23911907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432594841720