Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 154 2e-32 seq4 150 2e-31 >seq7 Length=35964315 Score = 154 bits (170), Expect = 2e-32 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || |||||||| ||||||||||| || ||||| Sbjct 23911907 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTT 23911848 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 23911847 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 23911788 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 23911787 GCTCATCTCCCGCGACGAGGGCCTCCAC 23911760 >seq4 Length=40407879 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||||||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 10866249 CTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGAATCTTCTTCTCGGGCTCCTT 10866190 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 10866189 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 10866130 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 10866129 GCTCATCTCCCGCGACGAGGGCCTGCAC 10866102 Score = 131 bits (144), Expect = 2e-25 Identities = 253/366 (69%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 38499766 TCAAAGCGTCCAGGCCTAAGTAAAGCAGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 38499707 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || |||| ||| || |||||| | |||||||||||||||| ||||| |||||||| | Sbjct 38499706 ATAACAATAATTCCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAACAGTTGGTTGA 38499649 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9704 |||||| |||| ||||||||| | | ||| | || | |||| | || || | Sbjct 38499648 GAGTTTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCGACAG 38499589 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGA 9763 ||||||| ||||||| || || ||||| || ||| | | | | ||| ||| ||| Sbjct 38499588 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGA 38499530 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || | || || ||||||||||||||||||||||| | | | | ||| || Sbjct 38499529 TCACGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCTGAA-AT 38499471 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || || || || ||| || || ||||| || || ||| || | ||| ||||| || Sbjct 38499470 TGAGAAAAATGGCACACCAGCCTCTCCCGCGATTGCCTTGGCAAGCAAAGTTTTACCAGT 38499411 Query 9883 ACCTGG 9888 || || Sbjct 38499410 TCCAGG 38499405 Score = 102 bits (112), Expect = 1e-16 Identities = 277/414 (67%), Gaps = 20/414 (5%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| | |||||||| || ||||| || || | |||| | || ||||| Sbjct 39891024 CGATCAAACCTTCCTGGACGCAGAAGCGCAGAGTCCAGCACATCAGGCCTGTTGGTCGCA 39891083 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| ||| | | ||| |||| | |||| ||||||||||| ||||| || |||| Sbjct 39891084 GCGAGGACGATGACACCACTGTTGCCGG--CAAAGCCATCCATCTCAGTCAAGAGCTGGT 39891141 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCC 9700 |||| || || |||| || || || | | | | ||||||| || ||| | || Sbjct 39891142 TAATGGTCTGCTCCCTCTCGTCGTTACCACCACCGAGC-CCAGCACCACGCTGCCTCCCG 39891200 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTC 9756 ||||||||||||||||| |||||||| ||||| || ||| || || | || Sbjct 39891201 ACGGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTC----TC 39891256 Query 9757 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 ||||| || || ||| || | || || ||||| || || | ||| || || | | Sbjct 39891257 GAAGAGGTCGCG--CACCCTGGATGCACCGACACCGACGAAGAGCTCGACGAACTCGGAC 39891314 Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 |||| || || ||| || || || || || || | ||| || || || || || Sbjct 39891315 GCGGCGCAGGAGAAGAAAGGCACGCCAGCCTCTCCGGCGACGGCACGCGCCAGGAGGGTT 39891374 Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||||| || || ||| ||| |||||| | || | | | || |||||||| || Sbjct 39891375 TTACCTGTCCCAGGCGGACCGACGAGGA-GACATCCCTTGGGGATCTTGGCACC 39891427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258343013880