Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7 206 3e-48 seq4 192 6e-44 >seq7 Length=35964315 Score = 206 bits (228), Expect = 3e-48 Identities = 453/661 (69%), Gaps = 22/661 (3%) Strand=Plus/Minus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || |||||| | |||||||| || | ||||||| | ||| ||| || |||| || Sbjct 23912110 GACGTCCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 23912052 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| ||||||||| | |||| | | || || | ||||||| Sbjct 23912051 CCACTCGGAGATGTACTCGCTGCTTCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGA 23911992 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 || ||||| ||||| || || |||||| || | || || || |||||||| Sbjct 23911991 CCACCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCAT 23911932 Query 59948 GCAGTGGAT-GA-GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 || ||||| || | | ||||| || || | || ||| | || || || ||||| Sbjct 23911931 GCGCTGGATCGACGGCGGGGAGCGC--TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTT 23911874 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||||||||| ||||| ||||| || || ||||||||||| ||||| |||||| Sbjct 23911873 GAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC 23911814 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||||||||| | |||||||||||||| || ||||| |||||||||||||| || Sbjct 23911813 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGAC 23911754 Query 60126 TTTGCAGTGACGCTCTATTCACACCT-ATTGGAAAAATGCCCTTCCAAGG--ATATTCAC 60182 || || || | | || | | |||| | | | | || | | | || | | | Sbjct 23911753 TTCGC-CTGCCTC-CTCTAC-GACCTCCTCCGCAGCAAGCTCGACGAGGGCCGCGTCCGC 23911697 Query 60183 AAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 |||| || | | | | | || | ||| |||||||| || || ||||| || Sbjct 23911696 GAGATCGTCGCCGACGCCGT-CGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGT 23911638 Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301 | ||| | || ||| ||| || |||| |||||||| |||| ||||| ||||| Sbjct 23911637 CGCGCTCGTCGGAATGAACGGCGGGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCG 23911578 Query 60302 C---CTCATGGCCCAGTTTGGAGAAGGACCA-ATTTACGGCGTGAATAACCCTTTCGACT 60357 | |||||||| | ||| | | | | || ||| ||| ||||| ||||||| Sbjct 23911577 CCTGCTCATGGCGC----TGGGGCACCAGAAGATGTACAACGTCGCCAACCCATTCGACT 23911522 Query 60358 GGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATT 60417 |||||||| ||||||| || | || |||||||||||||| |||||||| |||||||| | Sbjct 23911521 GGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGT 23911462 Query 60418 A 60418 | Sbjct 23911461 A 23911461 >seq4 Length=40407879 Score = 192 bits (212), Expect = 6e-44 Identities = 387/566 (68%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||| |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 10866662 TTCCCGATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 10866603 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 | | ||||||| | |||||| ||| ||| | | |||||| || ||| | Sbjct 10866602 ACGGCCGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGAGGCGCTCTCCCCC 10866543 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 10866542 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 10866483 Query 59739 ATGGAAAATATAGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | ||| ||| || || ||| | ||||||||||| | Sbjct 10866482 CTCGAGAACCTCGCGTCCCGCTTCATGTCC---GACGTGCAGGTCGCCGAGGCCCGCGCC 10866426 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 10866425 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 10866367 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 10866366 CGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGT 10866307 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| || | || || || |||||||||| ||||| || | | ||||| Sbjct 10866306 CCCCGCCGTACGCCGCAAGGCCGACTGGGCCATGCGCTGGATTGACGGCGGGGAGCGC-- 10866249 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || |||||||||||||| ||||| ||| Sbjct 10866248 TTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCGAGGGAATCTTCTTCTCGGGCTCCTTC 10866189 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || |||||||||||||| | |||||||||||| Sbjct 10866188 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 10866129 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || ||||| ||||||||||| || Sbjct 10866128 CTCATCTCCCGCGACGAGGGCCTGCA 10866103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522489339280