Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 127 2e-24 seq3 96.9 4e-15 seq5 93.3 5e-14 seq9 89.7 6e-13 >seq7 Length=35964315 Score = 127 bits (140), Expect = 2e-24 Identities = 276/404 (68%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 23911803 AGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 23911862 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGT 74923 |||||||| || || || || |||||||| ||||| | ||||| || | | | | || Sbjct 23911863 AAGATGCCCTCAACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGCGCTCC--CCGCCGT 23911920 Query 74924 C-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982 | ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 23911921 CGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGCGC 23911980 Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 |||||||| ||||||| || || || | | || | | || |||||| Sbjct 23911981 GGAAGAGGTGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGAAGCAGCGAGTACA 23912040 Query 75043 TCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 ||||||| || || |||| || ||| |||| | ||||||| | |||||||| || Sbjct 23912041 TCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCG 23912099 Query 75102 ATCTGTACATCCTTTGA-AAAATTCATGTCGATA--TTCTCCATGACGATGCCGTCCGAG 75158 | ||| || || || | | | | || | ||||| | ||||||||||| ||| Sbjct 23912100 ACCTGGACGTC---GGACATGAAGCGGGAGGAGAGGTTCTCGAGCACGATGCCGTCGGAG 23912156 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202 |||||||| || || || || ||| ||||||||||| || Sbjct 23912157 GCGGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTC 23912200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 31973523 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 31973582 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 31973583 ACTGAGCTACGAGAGC 31973598 >seq3 Length=50651951 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 79617 GTCCAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTC 79676 || || | |||||||| |||| |||| |||| |||||||||||||||||||||||||| Sbjct 50198199 GTACAAATTGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTC 50198258 Query 79677 T-ACCAATTGAGCTACGAAAGCAAA 79700 | ||||| |||||||||||||| || Sbjct 50198259 TAACCAACTGAGCTACGAAAGCTAA 50198283 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||||| Sbjct 43231917 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAT 43231858 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 43231857 TGAGCTACGAGAGC 43231844 >seq5 Length=47252588 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 7665623 GATTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 7665564 Query 79681 AATTGAGCTACGAAAGCA 79698 || ||||||||||||||| Sbjct 7665563 AACTGAGCTACGAAAGCA 7665546 >seq9 Length=58970307 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4276635 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4276576 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 4276575 TGAGCTACGAAAGC 4276562 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 9237727 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 9237668 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 9237667 TGAGCTACGAAAGC 9237654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 52146348 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 52146407 Query 79684 TGAGCTACGAA 79694 ||||||||||| Sbjct 52146408 TGAGCTACGAA 52146418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213694852600