Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq337 549 2e-151 seq14 549 2e-151 seq7 269 3e-67 seq8 125 9e-24 >seq337 Length=135516 Score = 549 bits (608), Expect = 2e-151 Identities = 658/894 (74%), Gaps = 0/894 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || || ||||| || |||||||| || || || Sbjct 1533 TTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 1474 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || || || || || | | || | || Sbjct 1473 TCTGGTTCTTTACTTTATGGAAACAATATTATTTCTGGTGCTATTATTCCTACTTCTGCG 1414 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | || || |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 1413 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATAC 1354 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 1353 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 1294 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 1293 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 1234 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | ||||| | ||||||||| | Sbjct 1233 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGT 1174 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 1173 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 1114 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||| ||||| || ||| | || ||||| ||||| || || Sbjct 1113 GCGGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 1054 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 1053 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 994 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| || || || | ||||||||||| || |||||||||||||| || ||| Sbjct 993 ACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGAGACTTATAAC 934 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||| ||||| |||||||| |||||||| | |||||||| |||||| |||||| ||| Sbjct 933 ATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAAC 874 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||| | || || | || || || | |||||||| ||||| Sbjct 873 TCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCT 814 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || | || |||||||||||||| || || ||||| |||||||| ||||| | Sbjct 813 TTAGGTATTAGTACTATGGCATTCAACCTAAATGGATTCAATTTCAACCAATCTGTAGTT 754 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| |||||| | |||||||| || |||||| Sbjct 753 GATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT 694 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 693 ATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 640 Score = 140 bits (154), Expect = 4e-28 Identities = 204/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || ||||| || ||| || | || ||| | | ||| || || Sbjct 110226 ACCTGTAACGATTCACTACCCTTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCG 110167 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| ||| ||||| || || || || ||||| || ||||| | |||||||| || Sbjct 110166 AATACACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGCGTATGCCCGAT 110107 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| | ||||||||| | |||| || | | || | |||| || | | Sbjct 110106 AGATCTACCTCTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAGGAAACAATTGCTTA 110048 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || |||| ||||| || || |||||||| || || || || || | Sbjct 110047 ATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAATACTGTCCGA 109988 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 109987 CAAATTGTTTATCGATGACTGAAGAATATGAACTTTCTACTTATGA 109942 >seq14 Length=147140 Score = 549 bits (608), Expect = 2e-151 Identities = 658/894 (74%), Gaps = 0/894 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || || ||||| || |||||||| || || || Sbjct 81878 TTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 81819 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || || || || || | | || | || Sbjct 81818 TCTGGTTCTTTACTTTATGGAAACAATATTATTTCTGGTGCTATTATTCCTACTTCTGCG 81759 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | || || |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 81758 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATAC 81699 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 81698 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 81639 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 81638 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 81579 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | ||||| | ||||||||| | Sbjct 81578 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGT 81519 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 81518 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 81459 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||| ||||| || ||| | || ||||| ||||| || || Sbjct 81458 GCGGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 81399 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 81398 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 81339 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| || || || | ||||||||||| || |||||||||||||| || ||| Sbjct 81338 ACTGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGGTCAAGAAGAAGAGACTTATAAC 81279 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||| ||||| |||||||| |||||||| | |||||||| |||||| |||||| ||| Sbjct 81278 ATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAAC 81219 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||| | || || | || || || | |||||||| ||||| Sbjct 81218 TCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCT 81159 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || | || |||||||||||||| || || ||||| |||||||| ||||| | Sbjct 81158 TTAGGTATTAGTACTATGGCATTCAACCTAAATGGATTCAATTTCAACCAATCTGTAGTT 81099 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| |||||| | |||||||| || |||||| Sbjct 81098 GATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT 81039 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 81038 ATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 80985 Score = 136 bits (150), Expect = 5e-27 Identities = 204/286 (71%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || ||||| || ||| || | || ||| | | ||| || || Sbjct 49673 ACCTGTAACGATTCACTACCCTTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCG 49732 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| ||| ||||| || || || || ||||| || ||||| | |||||||| || Sbjct 49733 AATACACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGCGTATGCCCGAT 49792 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| | ||||||||| | |||| || | | || | |||| || | | Sbjct 49793 AGATCTACCTCTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAGGAAACAATTGCTTA 49851 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || |||| ||||| || || |||||||| || || || || || | Sbjct 49852 ATTATAGTATTGATTTCGGAGTTTGTATATT-TGTGGTAACTGTGTTGAATACTGTCCGA 49910 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 49911 CAAATTGTTTATCGATGACTGAAGAATATGAACTTTCTACTTATGA 49956 >seq7 Length=35964315 Score = 269 bits (298), Expect = 3e-67 Identities = 332/454 (73%), Gaps = 0/454 (0%) Strand=Plus/Plus Query 176644 ATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCA 176703 ||||| ||||| || ||| | || ||||| ||||| || || || || || ||| || Sbjct 24459263 ATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCT 24459322 Query 176704 ATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAA 176763 ||||| || | || || | | | | || || || || ||||| || || Sbjct 24459323 ATGCATGGTTCCTTGGTAACCTATAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCT 24459382 Query 176764 AACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGT 176823 || | ||||||||||| || |||||||||| || || |||||||| ||||| || ||| Sbjct 24459383 AATGAGGGTTACAAATTTGGTCAAGAAGAAGGGATTTATAACATTGTGGCTGCTCATGGT 24459442 Query 176824 TACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTC 176883 || |||||||| | |||||||| |||||| |||||| ||||| | | | |||||| Sbjct 24459443 TATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTTGTTCTTTACACTTC 24459502 Query 176884 TTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATG 176943 ||| | || || | || || || | |||||||| ||||| | ||| || | || ||| Sbjct 24459503 TTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATG 24459562 Query 176944 GCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTG 177003 ||||||||||| || |||||||| |||||||| ||||| | || | ||| || Sbjct 24459563 GCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTT 24459622 Query 177004 ATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAG 177063 ||| ||| |||| |||||| |||||||| || |||||||||||||| |||||||| Sbjct 24459623 ATTAATACTTGGGCTGATATCACCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAA 24459682 Query 177064 CGTAATGCTCACAACTTCCCACTTGACCTTGCTG 177097 |||||||||||||||||||| || ||||| |||| Sbjct 24459683 CGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 24459716 >seq8 Length=40689132 Score = 125 bits (138), Expect = 9e-24 Identities = 201/286 (70%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || ||||| || ||| || | || ||| | ||| || || Sbjct 5425576 ACCTATAACGATTCACTACCCTTATGAAAAATCAATTACATCGGAGCATTTCCGGGGGCG 5425517 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| ||| ||||| || || || || ||||| || ||||| | |||||||| || Sbjct 5425516 AATACACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGCCCGAT 5425457 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 || |||| | ||||||||| | |||| || | || | |||| || | | Sbjct 5425456 AGATTTACCTCTTGTGGATTGGAGATTTGAA-AAGGTTATTAAAAGGAAACAATTGCTTA 5425398 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || |||| ||||| || || ||||||| || || ||||| || | Sbjct 5425397 ATTATAGTATTGATTTCGGAGTTTGTATATTTTGTTGTAACTGTGTTGAATATTGTCCGA 5425338 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||| ||| |||| ||||| |||||||||||||| |||| | ||| Sbjct 5425337 CAAATTGTTTATCGATGACTGAAGAATATGAATTTTCTACTTATGA 5425292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603491857779840