Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq8 96.9 3e-15 >seq2 Length=49199997 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 34603 CTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGA 34662 || ||| || ||||| | |||||||||||| ||||||||| | |||||||| || | ||| Sbjct 46940059 CTTCCAGTTTTACGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGA 46940118 Query 34663 CATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGC 34722 |||||| | || || || ||||||||||| ||| |||| |||||||||||||| || Sbjct 46940119 CATGGGACTTGGTGTTCCATTCAACATTGCATCGTACTCTCTTCTCACGTACATGATTGC 46940178 Query 34723 TCATGT 34728 ||| || Sbjct 46940179 TCAAGT 46940184 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||| |||||||||||||| |||| ||| ||||||||||| || || || | Sbjct 46940184 ACTTGAGCAATCATGTACGTGAGAAGAGAGTACGATGCAATGTTGAATGGAACACCAAGT 46940125 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||| | || |||||||| | ||||||||| |||||||||||| | ||||| || Sbjct 46940124 CCCATGTCTGCAGAGCGTTGATACATCTGGCAGGATAGCTCCCCATTCTCAACGTAAAAC 46940065 Query 6737 TGGCAG 6742 ||| || Sbjct 46940064 TGGAAG 46940059 >seq8 Length=40689132 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 34603 CTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGA 34662 || ||| || || || | |||||||||||| ||||||||| | |||||||| || | ||| Sbjct 23092171 CTTCCAGTTTTATGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGA 23092230 Query 34663 CATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGC 34722 |||||| | || || || ||||||||||| || |||| || || |||||||| || Sbjct 23092231 CATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTTACATACATGATTGC 23092290 Query 34723 TCATGT 34728 ||| || Sbjct 23092291 TCAAGT 23092296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||| |||||||| || || |||| || ||||||||||| || || || | Sbjct 23092296 ACTTGAGCAATCATGTATGTAAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGT 23092237 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||| | || |||||||| | ||||||||| |||||||||||| | || || || Sbjct 23092236 CCCATGTCTGCAGAGCGTTGATACATCTGGCAGGATAGCTCCCCATTCTCAACATAAAAC 23092177 Query 6737 TGGCAG 6742 ||| || Sbjct 23092176 TGGAAG 23092171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260511694640