Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 >seq1 Length=42145699 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || |||||||| || ||||||||||| ||| || | || ||||| ||| | Sbjct 35309694 AATGCAGATCTTTGTGAAGACACTTACTGGGAAGACTATCACGCTGGAAGTCGAGAGCTC 35309635 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| || || ||| || ||||| || || | || ||| Sbjct 35309634 TGACACAATTGACAAT--GTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCGGAC 35309577 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| ||||| || |||| |||| |||| ||| |||||||| Sbjct 35309576 CAGCAGCGACTCATCTTTGCTGGAAAGCAGCTGGAGGACGGGCGCACATTGGCCGATTAC 35309517 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 || ||||| |||||| ||| | || ||||| Sbjct 35309516 AATATCCAGAAAGAGTCTACTCTTCACTTGGT 35309485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860938406399