Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq9 122 7e-23 seq7 105 6e-18 seq4 105 6e-18 seq2 102 7e-17 seq5 98.7 9e-16 >seq1 Length=42145699 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||| ||| || |||||||| || || || ||||| || Sbjct 7134497 CATGCCTCCCCTGAGACGGAGCACCAGATGGAGGGTGCTCTCCTTCTGGATGTTATAGTC 7134438 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| | || |||||||| ||||||||||| || || | ||||||||| | Sbjct 7134437 AGCCAGGGTGCGTCCATCCTCAAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCCGG 7134378 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 ||| | || ||| |||||| ||| || |||| ||| | | | || ||| |||| Sbjct 7134377 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACT 7134319 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | ||||| | || || |||| || || |||||||| ||||| Sbjct 7134318 CCACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 7134267 Score = 122 bits (134), Expect = 7e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || |||||||| || || ||||| ||||| ||||| || || | || || Sbjct 7122696 CACCAGATGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGCAAGGGTGCGGCCATCCTC 7122637 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| ||||||||||||||||| | ||| | || ||| |||||| Sbjct 7122636 CAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 7122577 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || ||| |||||||| || | ||||| | | Sbjct 7122576 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCT 7122518 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || ||||| ||||| Sbjct 7122517 TGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7122487 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||| || || |||||||| || || ||||| ||||| Sbjct 7122489 CATGCCTCCCCTGAGACGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATC 7122430 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||||| || | || || ||||| ||||| ||||| || |||||||||||||| | Sbjct 7122429 AGCAAGTGTGCGCCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGG 7122370 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 ||| | || ||| |||||| ||| || |||| ||| | | | || || |||| Sbjct 7122369 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACT 7122311 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | ||||| | || || || || || || || ||||| ||||| Sbjct 7122310 CCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7122259 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || |||||||| || || ||||| ||||| ||||| || || | || || Sbjct 7135388 CACCAGATGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGCAAGGGTGCGGCCATCCTC 7135329 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| ||||||||||||||||| | ||| | || ||| |||||| Sbjct 7135328 CAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 7135269 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || |||||||| || | ||||| | | Sbjct 7135268 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCT 7135210 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || ||||| ||||| Sbjct 7135209 TGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7135179 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | ||| | ||||| || || || |||||| || ||||| |||||||| Sbjct 35309467 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCGGCC 35309526 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 | ||| || |||| || ||||| || || ||||| || || |||||||||| ||||||| Sbjct 35309527 AATGTGCGCCCGTCCTCCAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCCGGTGGG 35309586 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | || ||| |||||| ||| || || | | | | || || ||| ||| Sbjct 35309587 -ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCAATTGTGTCAGAGCT---CTC 35309642 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||||| | || || || || || || |||||||| ||||| Sbjct 35309643 GACTTCCAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 35309693 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || ||||| ||||||||||| || || | || || Sbjct 7656329 CACCAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTC 7656270 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || |||||||||||||| | ||| | || ||| |||||| Sbjct 7656269 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 7656210 Query 39195 GATTTT 39200 ||| || Sbjct 7656209 GATCTT 7656204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| || || || |||||||| ||||| || || | || || Sbjct 7122923 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCCGCAAGGGTGCGGCCATCCTCC 7122864 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || |||||||||||||| | ||| | || ||| |||||| | Sbjct 7122863 AGCTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 7122804 Query 39196 ATTTT 39200 || || Sbjct 7122803 ATCTT 7122799 >seq9 Length=58970307 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || || || || ||||| || || || ||||| || Sbjct 15032478 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCTCGTCCTCC 15032537 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || ||||| || || || ||||||||||| | || | | ||| |||||| | Sbjct 15032538 AGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGG 15032597 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 | || || | |||||||||| || || |||||| |||| |||||| | || Sbjct 15032598 ACCTTGGCCTTCACGTTCGCCACCGTGTCCGACGCCTCCACCTCCAGCGTGATCGTCTTG 15032657 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||||||||| || |||||||| |||||||| Sbjct 15032658 CCCGTCAGCGTCTTCACAAAGATCTGCATCTT 15032689 >seq7 Length=35964315 Score = 105 bits (116), Expect = 6e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || |||||| ||| || || || || || ||||| || || || | Sbjct 32238632 GCGGAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCC 32238573 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 32238572 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTT 32238513 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 32238512 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGA 32238454 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 32238453 TGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 32238414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || ||||| ||||| || || |||| |||||||| Sbjct 30598578 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCGTCCTCAAGCTGC 30598519 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || ||||| ||||| ||||| | || | || ||| ||||| ||| || Sbjct 30598518 TTGCCAGCGAAGATAAGGCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTG 30598459 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | ||| || ||||| || |||| ||||| | || || ||| Sbjct 30598458 GCCTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTC 30598399 Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286 || || || |||||||||||||||| Sbjct 30598398 AGGGTCTTCACAAAGATTTGCATCT 30598374 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || ||||| || || |||| |||||||| Sbjct 30598806 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCGTCCTCAAGCTGC 30598747 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || || ||||||||||| | || | || ||| || ||| ||| || Sbjct 30598746 TTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTG 30598687 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | || || |||||| || |||| ||||| | || || || Sbjct 30598686 GCCTTCACATTGTCAATGGTGTCAGACGACTCTACCTCCAGGGTGATGGTCTTGCCAGTG 30598627 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||| ||||| Sbjct 30598626 AGGGTCTTCACAAAGATCTGCAT 30598604 >seq4 Length=40407879 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG-TCAT 39133 ||||| || || ||| ||| || || ||||| || |||||||| || || | || | Sbjct 37852067 CACCAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCCATCCT 37852126 Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193 ||||||| ||||| ||||| || |||||||||||||| | ||| | || ||| |||||| Sbjct 37852127 CAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 37852186 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || || | ||| | | | ||| || ||||| || || | |||||| | Sbjct 37852187 GGATCTTGGCCTTCA-CGTTGTCGATCGTGTCAGAGGACTCAACCTCAAGCGTGATGGTC 37852245 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || || || |||||||| ||||||| Sbjct 37852246 TTGCCAGTGAGGGTCTTCACAAAGATCTGCATCT 37852279 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| ||||| || |||||||| || || | || |||||||| ||||| || || Sbjct 37851629 CTCCTTTTGGATATTGTAGTCGGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAA 37851688 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | ||| | || ||| |||||| ||| || || | ||| Sbjct 37851689 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 37851747 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || |||||||| |||| ||||| | || || || || || || | Sbjct 37851748 TGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGA 37851807 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 37851808 CAAAGATCTGCAT 37851820 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || ||||| || || || || || || || | Sbjct 37851377 GCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAGTCAGCCAGGGTGCGGCC 37851436 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| ||||| || |||||||||||||| | ||| | || ||| || Sbjct 37851437 ATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 37851496 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| |||| Sbjct 37851497 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGA 37851555 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || |||||||| ||||| Sbjct 37851556 TGGTCTTGCCAGTAAGAGTCTTGACAAAGATCTGCAT 37851592 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| ||||| || |||||||| || || | || |||||||| ||||| || || Sbjct 37851173 CTCCTTTTGGATATTGTAGTCGGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAA 37851232 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | ||| | || ||| |||||| ||| || || | | Sbjct 37851233 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 37851292 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || |||||||| |||| ||||| | || || || || || || || Sbjct 37851293 GTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 37851352 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 37851353 AAAGATCTGCAT 37851364 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || ||||| || || || ||||| || || | Sbjct 37851833 GCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAGTCAGCAAGGGTACGGCC 37851892 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| || || || |||||||||||||| | || | || ||| || Sbjct 37851893 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTT 37851952 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||| || |||| |||| Sbjct 37851953 GTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGACGACTCAACCTCCAGAGTGA 37852011 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || ||||| || ||||| Sbjct 37852012 TGGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 37852048 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || ||||| || |||||||| || |||| || ||||| Sbjct 38276866 TGGAGGGTGGACTCCTTTTGGATGTTATAGTCAGCAAGTGTGCGCCCGTCCTCGAGCTGC 38276807 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || || ||||||||||| | || | | ||| |||||| ||| ||| Sbjct 38276806 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTC 38276747 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | ||||| || || || || | ||||| | || || || Sbjct 38276746 GCCTTGACATTGTCAATTGTATCCGAGGATTCAACCTCGAGGGTGATGGTCTTGCCTGTG 38276687 Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286 || || || ||||| || ||||||| Sbjct 38276686 AGTGTCTTCACAAATATCTGCATCT 38276662 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || ||||| || ||||| || | || || | || || Sbjct 37850927 CACCAGGTGGAGGGTGGACTCCTTCTGTATGTTGTAATCCGCCAAGGTGCGGCCATCCTC 37850986 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | ||| | || ||| || ||| Sbjct 37850987 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTG 37851046 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| || | ||| | | | || || |||||||| |||| ||||| | | Sbjct 37851047 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCAGAAGACTCCACCTCCAAGGTGATGGTCT 37851105 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || |||||||| ||||| Sbjct 37851106 TGCCAGTAAGAGTCTTGACAAAGATCTGCAT 37851136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || || || || || || | Sbjct 37387854 GCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCC 37387795 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || |||||||||||||| | ||| | || ||| || Sbjct 37387794 ATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 37387735 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | || | |||||||| |||| |||| Sbjct 37387734 GTCCTGGATCTTCGCCTTCA-CGTTGTCAATGGTGTGAGAGGACTCCACCTCCAGGGTGA 37387676 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || || ||||| ||||| Sbjct 37387675 TGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 37387639 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | |||| || ||||| ||| || || || || || || || Sbjct 38277803 GCCACCTCGGAGGCGCAGAACCAGGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGC 38277744 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 | || || |||| |||||||| || || ||||| || || ||||||||||| | || Sbjct 38277743 CAAGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGCGG 38277684 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| ||| || | | | | || ||| ||||| || Sbjct 38277683 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCGGAAGACTCGAC 38277624 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || |||||||| ||||| Sbjct 38277623 CTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 38277576 >seq2 Length=49199997 Score = 102 bits (112), Expect = 7e-17 Identities = 163/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || |||||||| || || || | Sbjct 39557191 GCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCC 39557250 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || || || || || ||||||||||| | || | | ||| || Sbjct 39557251 GTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATACCCTCCTT 39557310 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || |||| ||| | | | || ||||| |||||| || | |||| Sbjct 39557311 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGA 39557369 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT-TACGCCGAG 39296 | | || ||||||||||| || || ||||| |||||||| ||||||| Sbjct 39557370 TCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCATCTTGGCCGCCGAG 39557419 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| ||||| || || ||||| ||||| || || | || || Sbjct 10740285 CACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGGCCATCCTC 10740226 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || || ||||||||||| | ||| | || ||| |||||| Sbjct 10740225 GAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 10740166 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || | ||| | | | ||| || ||||| || || | ||||| | | Sbjct 10740165 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGAGTGATGGTCT 10740107 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || |||||||| ||||| Sbjct 10740106 TGCCGGTGAGGGTCTTGACAAAGATCTGCAT 10740076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || || || || || || | Sbjct 10740519 GCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCC 10740460 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || |||||||||||||| | ||| | || ||| || Sbjct 10740459 ATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 10740400 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | | | | || || ||||| || || | ||||| Sbjct 10740399 GTCCTGGATCTTCGCCTTCACATTGTCGATTGTGTCTGAGGACTCTACCTCAAGGGTGAT 10740340 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || ||||| || ||||| Sbjct 10740339 AGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCAT 10740304 >seq5 Length=47252588 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| | ||||| || ||||| ||| || || || || || ||||| Sbjct 14113891 CCTCCCCTGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 14113950 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| || || || || ||||||||||| | || Sbjct 14113951 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 14114010 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| || || | ||| | | | || || |||||||| Sbjct 14114011 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 14114069 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| ||||| | || |||||||| || || || ||||| |||||||| Sbjct 14114070 CTCCAGTGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 14114120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || || ||||| || || | Sbjct 6910703 GCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCC 6910644 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || |||||||||||||| | ||| | || ||| || Sbjct 6910643 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 6910584 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | ||| || ||||| || || | |||| Sbjct 6910583 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGAGTGA 6910525 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || || ||||| ||||| Sbjct 6910524 TGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 6910488 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || || || || || | || |||||||| Sbjct 6910462 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCAAGCTGC 6910403 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 6910402 TTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 6910343 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | ||| || ||||| || || | |||||| | || || || Sbjct 6910342 GCCTTCA-CGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGCGTGATGGTCTTGCCAGT 6910284 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 6910283 GAGGGTCTTGACGAAGATCTGCAT 6910260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543835775681