Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq5 100 2e-16 seq4 98.7 7e-16 seq2 93.3 3e-14 seq7 84.2 1e-11 >seq1 Length=42145699 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| ||||| || ||||| || |||||||| | | Sbjct 35309465 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAGACCATCACACTTGAAGTTGAGAGCTCT 35309406 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || || ||||| || || | || ||||| || Sbjct 35309405 GACACAATTGACAATGTTAAGGC-CAAGATCCAGGACAAGGAGGGCATCCCACCAGACCA 35309347 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || ||||| || | ||||| || | || || || Sbjct 35309346 GCAGCGGCTTATCTTTGCTGGGAAGCAGCTGGAGGATGGGCGCACATTGGCGGACTATAA 35309287 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || ||||| Sbjct 35309286 CATTCAAAAGGAATCCAC 35309269 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || |||||||| || ||||| | Sbjct 7656120 ATGCAGATTTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAGAGTTCT 7656179 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || || ||||| || || | || ||||| || Sbjct 7656180 GACACCATTGACAATGTTAAGGC-CAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 7656238 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || ||||| || | ||||| | | ||||||||| Sbjct 7656239 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCCGATTACAA 7656298 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 7656299 TATCCAGAAGGAGTCTAC 7656316 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| ||||| || || || | Sbjct 7134039 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 7134098 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || || ||||| Sbjct 7134099 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAG 7134158 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || || | ||||| | | || |||||| Sbjct 7134159 CAGCGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACCCTGGCTGACTACAAC 7134218 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 7134219 ATCCAGAAGGAG 7134230 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || || | Sbjct 7135179 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 7135238 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 7135239 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 7135298 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || ||||| || | ||||| | | |||||||| Sbjct 7135299 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCGGATTACAAT 7135358 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 7135359 ATCCAGAAGGAG 7135370 >seq5 Length=47252588 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || |||||||| || || || |||||||| || || || ||| | Sbjct 6910487 AATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTC 6910546 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| || || | || || || || Sbjct 6910547 AGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 6910606 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || ||||| || | ||||| | | || ||||| Sbjct 6910607 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAA 6910666 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 6910667 CATCCAGAAGGAGTCCAC 6910684 >seq4 Length=40407879 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || ||| | Sbjct 37387639 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCT 37387698 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| |||| | | || || || ||||| || || | || ||||| || Sbjct 37387699 CACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 37387758 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || ||||| || | ||||| | | || |||||| Sbjct 37387759 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 37387818 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 37387819 ATCCAGAAGGAGTCCAC 37387835 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || |||||||| || ||||| || | Sbjct 37852048 ATGCAGATATTTGTGAAGACCCTCACCGGCAAGACCATCACTCTGGAGGTTGAGTCGTCT 37851989 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || || || || Sbjct 37851988 GACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 37851929 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || || | || || | | || |||||| Sbjct 37851928 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCTGACTACAAC 37851869 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||| || |||||||| Sbjct 37851868 ATACAGAAGGAGTCCAC 37851852 >seq2 Length=49199997 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || || || ||||| || || || || ||| | Sbjct 10740304 ATGCAGATTTTTGTGAAGACTCTCACTGGCAAGACTATCACCCTTGAGGTAGAGTCCTCA 10740363 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || ||||| || Sbjct 10740364 GACACAATCGACAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 10740422 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || ||||| || | ||||| | | || ||||| Sbjct 10740423 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAA 10740482 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 10740483 CATCCAGAAGGAGTCCAC 10740500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || || || ||||| || |||||||| ||||| || || | Sbjct 39557409 AAGATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACCCTCGAGGTGGAGAGC 39557350 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || ||| | ||||| || Sbjct 39557349 AGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCGGAC 39557290 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||| || || || || |||| ||||| | | ||||||| Sbjct 39557289 CAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTAC 39557230 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 39557229 AACATCCAGAAGGAGTCGAC 39557210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || |||||||| || || || |||||||| || || || ||| | Sbjct 10740075 AATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTC 10740134 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| || || | || || || || Sbjct 10740135 AGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 10740194 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || || || || | ||||| | | |||||||| Sbjct 10740195 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCTGATTACAA 10740254 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 10740255 CATCCAAAAGGAGTCCAC 10740272 >seq7 Length=35964315 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || || || || | Sbjct 30598604 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTAGAGTCGTCT 30598663 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || || || | || || || || Sbjct 30598664 GACACCATTGACAATGTGAAGGCCAAGA-TCCAGGATAAGGAGGGCATCCCTCCGGACCA 30598722 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || |||| ||||| | | || ||||| Sbjct 30598723 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTGCGGACTACAA 30598782 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 30598783 CATCCAGAAGGAGTCCAC 30598800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008211731196