Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 1e-15 seq5 96.9 5e-15 seq7 84.2 3e-11 >seq4 Length=40407879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 78201 AACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCG 78260 ||||| |||| ||| || ||||| |||||||||||||| ||| ||||||||| | || Sbjct 4344592 AACATAGGAACAATTCCATTAGACGTTCCATTTGTTCCTCGAATGTAACTTCCAGTAGCA 4344533 Query 78261 CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 |||||||| || || | || |||||||| || || || | ||| || Sbjct 4344532 CGAATATTGTGAACTGAGACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCC 4344473 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 |||| |||||||| || ||||| || |||||||| ||||| | ||| |||||||| Sbjct 4344472 TTCAGAGTATCGTAAATTCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 4344414 >seq5 Length=47252588 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| | || | ||||| |||| ||| || Sbjct 27674630 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACGCGTAACATAGGAACAATTCCA 27674689 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||||||||||||||| ||| ||||| ||| | || |||||||| || || Sbjct 27674690 TTCGATGTTCCATTTGTTCCTCGAATGTAACTACCAGTAGCACGAATATTGTGAACCGAG 27674749 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| || || ||||| Sbjct 27674750 ACACCAATTCCTCCAGCTGATTTGCTTATGACAGCACATTCCTTCAGAGTTTCATAGATT 27674809 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| | ||| |||||||| Sbjct 27674810 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 27674850 >seq7 Length=35964315 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| |||| | | ||| |||| ||| || Sbjct 14546038 CCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 14545979 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| || ||||||||||| ||| || || ||| | || |||||||| ||| || Sbjct 14545978 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATATTGTGAATTGAG 14545919 Query 78279 ATCCCTATTCCTCCTGC-CATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| || ||| | ||| || | | ||||| || || Sbjct 14545918 ACACCAATTCCTCCAGCGCAT-TTGCTTATCATAGCACATTCTGAGAGAGTATCATAAAT 14545860 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| ||||| ||||| ||||| | ||| || |||||| Sbjct 14545859 TCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 14545817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665873707680