Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 seq7 95.1 2e-14 seq4 93.3 6e-14 seq1 91.5 2e-13 >seq5 Length=47252588 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | ||||| |||| ||| || Sbjct 27674630 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACGCGTAACATAGGAACAATTCCA 27674689 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||||||||| ||| ||||| ||| ||||||||||| || || Sbjct 27674690 TTCGATGTTCCATTTGTTCCTCGAATGTAACTACCAGTAGCACGAATATTGTGAACCGAG 27674749 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| |||| || |||||||| Sbjct 27674750 ACACCAATTCCTCCAGCTGATTTGCTTATGACAGCACATTCCTTCAGAGTTTCATAGATT 27674809 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| |||||||| Sbjct 27674810 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 27674850 Score = 86.0 bits (94), Expect = 9e-12 Identities = 156/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| || Sbjct 3403332 CCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 3403273 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| |||||||||||||| ||| || || ||| || ||||| || ||| || Sbjct 3403272 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATGTTGTGAATTGAG 3403213 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTAG---AGCACAGCGTTTCAATGTGTCATA 76929 | || |||||||| || ||||| | ||| |||| | | | || ||||| Sbjct 3403212 ACACCAATTCCTCCAGCGCATTT----GCTTATCGTAGCATATTCTGAGAGAGTATCATA 3403157 Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || ||||| ||||||||||| ||||| | ||| || |||||| Sbjct 3403156 AATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 3403111 >seq7 Length=35964315 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| | | ||| |||| ||| || Sbjct 14546038 CCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 14545979 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| |||||||||||||| ||| || || ||| || |||||||| ||| || Sbjct 14545978 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATATTGTGAATTGAG 14545919 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| | | || ||||| || Sbjct 14545918 ACACCAATTCCTCCAGCGCATTTGCTTATCATAGCACATTCTGAGAGAGTATCATAAATT 14545859 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| ||||||||||| ||||| | ||| || |||||| Sbjct 14545858 CCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 14545817 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| || Sbjct 3450177 CCACCTTGATCAACATAACAGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 3450236 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| |||||||||||||| ||| || || ||| || ||||| || ||| || Sbjct 3450237 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATGTTGGGAATTGAG 3450296 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAGCGTTTCAATGTGTCATA 76929 | || |||||||| || ||||| | ||| |||||| | | || ||||| Sbjct 3450297 ACACCAATTCCTCCAGCGCATTT----GCTTATCGCAGCACATTCTGAGAGAGTATCATA 3450352 Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || ||||| ||||||||||| ||||| | ||| || |||||| Sbjct 3450353 AATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 3450398 >seq4 Length=40407879 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | || | || | ||||| |||| ||| || Sbjct 4344634 CCACCTTGATCAACATAACGAGCAGTATCGTTGAATACACGTAACATAGGAACAATTCCA 4344575 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || ||||||||||| ||| ||||||||| ||||||||||| || || Sbjct 4344574 TTAGACGTTCCATTTGTTCCTCGAATGTAACTTCCAGTAGCACGAATATTGTGAACTGAG 4344515 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| |||| || || || || Sbjct 4344514 ACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACATTCCTTCAGAGTATCGTAAATT 4344455 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| |||||||| Sbjct 4344454 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 4344414 >seq1 Length=42145699 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| || Sbjct 40778246 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 40778187 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| |||||||||||||| ||| || || ||| || ||||| || ||| || Sbjct 40778186 TTAGAAGTACCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCGAATGTTGTGAATTGAG 40778127 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTC---AATGTGTCATAG 76930 | || |||||||| || ||| || | |||||| || | | || ||||| Sbjct 40778126 ACACCAATTCCTCCAGCGCATTTGCTTATCACAGCACA---TTCCGAGAGAGTATCATAA 40778070 Query 76931 ATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || ||||| ||||||||||| ||||| | ||| || |||||| Sbjct 40778069 ATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCTA 40778025 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/157 (75%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCG-TTC--AAATTCATCTCCCCAAACATCATCCAA 76548 |||||||||||||| ||| || | ||| ||| ||||||||||| |||| |||| Sbjct 40778762 CTCTCTTTCATATT---TATCGTACAGATTCTGAAACTCATCTCCCCAGCAATCAGCCAA 40778706 Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCA 76607 ||| ||| |||||| ||||| | || |||||||| ||| | | || |||| || || Sbjct 40778705 ACCTGGAGCTTCATTGGGACAAAACAGTGACCACTGTTCAT-TGCGTTGTACCCTTTCCA 40778647 Query 76608 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 | || |||||||| ||||| |||||| || ||||| Sbjct 40778646 TGAATAGATCAGGAATCCACAGAGCATAGAAAAGATC 40778610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931396763840