Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq7 138 2e-27 seq2 105 1e-17 seq5 104 5e-17 seq1 104 5e-17 >seq7 Length=7914316 Score = 138 bits (152), Expect = 2e-27 Identities = 313/464 (67%), Gaps = 9/464 (2%) Strand=Plus/Minus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || |||||||| |||||||||| | || || || || || | || ||||| || Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||||||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 1959023 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1958964 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| ||||| ||||||||||| ||||| | |||| | || | || || Sbjct 1958963 GAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCCTC 1958904 Query 230350 CTCCAGAACAAGCTACCATTCGA-GACGG--TCAAACAAATCATTACAGAAGCAGTTGAA 230406 |||| |||||| || ||| ||| | || ||| | | || || || || Sbjct 1958903 CTCCGCTCCAAGCTCCC---CGACGACCGCCTCCGCGCCATCGTCGCCGACGCCGTCGAG 1958847 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465 | ||| ||| ||| | || ||||| | || || ||| || | |||||||| | Sbjct 1958846 ATCGAGCGGGACTTCGTCTGCGACGCCCTCCCCTG-CGCGCTCGTCGGCATGAATCAGGC 1958788 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || |||| ||||||||||| ||||| ||||||||| | | | || || || || Sbjct 1958787 CCTCATGGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCCTCGGCCACCC 1958728 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 || | ||| || | |||||||| | | ||||||||||| || || || || || Sbjct 1958727 CAAGATCTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAA 1958668 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 ||||||||||||||| ||||| ||| | || || ||| |||||| Sbjct 1958667 GACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCCT 1958624 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7458126 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7458185 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7458186 CCCACGGTGGGC 7458197 >seq2 Length=11374105 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 7094436 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7094377 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 7094376 CCCCACGGTGGGC 7094364 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 10374209 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10374150 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10374149 CCCACGGTGGGC 10374138 >seq5 Length=8147712 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7825807 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7825866 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7825867 CCCACGGTGGGC 7825878 >seq1 Length=14772968 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 9231308 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9231367 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9231368 CCCACGGTGGGC 9231379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823728932600