Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 4e-15 >seq7 Length=7914316 Score = 96.9 bits (106), Expect = 4e-15 Identities = 281/431 (65%), Gaps = 3/431 (1%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | |||||||| | | ||| || ||||| || || || Sbjct 1958917 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 1958976 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || ||| ||| || || ||| Sbjct 1958977 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAG 1959036 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || ||||||||| | || || |||| | || |||||| | | | || || Sbjct 1959037 AAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGT-- 1959094 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||| |||| | |||| ||||| || | | ||| | || || | ||| Sbjct 1959095 CGA-TCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCCACGCAGGGGACGGTGTCCACGGCG 1959153 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 || | | || ||| ||| | || || || || | ||| ||||||||| Sbjct 1959154 CGGAAGAGGCGGGCCTTGGCCTCGGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTAC 1959213 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 || |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| || || Sbjct 1959214 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCG 1959273 Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 | || || ||| ||| || | || || || ||| ||||||||||||| || Sbjct 1959274 ACCTGGACCTCCTTCATGAAGCGGCCSGCCAGGTTCTCGAGCACGATGCCGTCGGAGGCC 1959333 Query 17381 GCGAAAAACGC 17391 ||||| || || Sbjct 1959334 GCGAAGAAGGC 1959344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545470613600