Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq7 96.9 4e-15
>seq7
Length=7914316
Score = 96.9 bits (106), Expect = 4e-15
Identities = 281/431 (65%), Gaps = 3/431 (1%)
Strand=Plus/Plus
Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020
|| || ||||| ||||| || | |||||||| | | ||| || ||||| || || ||
Sbjct 1958917 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 1958976
Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080
| |||||||| || || ||||| | ||| || || ||| ||| || || |||
Sbjct 1958977 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAG 1959036
Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140
|| || ||||||||| | || || |||| | || |||||| | | | || ||
Sbjct 1959037 AAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGT-- 1959094
Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200
||| |||| | |||| ||||| || | | ||| | || || | |||
Sbjct 1959095 CGA-TCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCCACGCAGGGGACGGTGTCCACGGCG 1959153
Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260
|| | | || ||| ||| | || || || || | ||| |||||||||
Sbjct 1959154 CGGAAGAGGCGGGCCTTGGCCTCGGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTAC 1959213
Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320
|| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| || ||
Sbjct 1959214 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCG 1959273
Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380
| || || ||| ||| || | || || || ||| ||||||||||||| ||
Sbjct 1959274 ACCTGGACCTCCTTCATGAAGCGGCCSGCCAGGTTCTCGAGCACGATGCCGTCGGAGGCC 1959333
Query 17381 GCGAAAAACGC 17391
||||| || ||
Sbjct 1959334 GCGAAGAAGGC 1959344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545470613600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |