Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq16 125 6e-24
seq8 105 6e-18
seq3 87.8 2e-12
seq18 84.2 2e-11
>seq16
Length=4450370
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||||||||| || ||||||||||| || ||||| || ||||||||||||| || ||
Sbjct 3338500 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCG 3338441
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
|| | || || | |||||||||| ||| | ||| |||||||| |||||| |||
Sbjct 3338440 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTC 3338381
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | ||| || || || |||| |||| || |||||||||||||| | ||
Sbjct 3338380 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTGCCGGTAAGAGTC 3338321
Query 21159 TTGACAAATATTTGCAT 21175
||||| || || |||||
Sbjct 3338320 TTGACGAAGATCTGCAT 3338304
>seq8
Length=7641483
Score = 105 bits (116), Expect = 6e-18
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||| | |||| || |||||||| || ||||| ||||||||
Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|||||| || ||||||| ||||| || || || | || || | |||||||||| ||
Sbjct 6351953 AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGT 6352012
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| |||||| || || | | ||| || || | ||||
Sbjct 6352013 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACC 6352072
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| || ||||| || || | || || || ||||| |||||
Sbjct 6352073 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119
>seq3
Length=8976907
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| || || || | |||||||| || | |||||||||||||| ||||| || |||||
Sbjct 8499990 TCCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCCGC 8500049
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC 21040
|||||| || ||||||||||||| ||||| ||
Sbjct 8500050 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGC 8500082
>seq18
Length=4131207
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
||||| | ||||| | |||| || | || |||||||| || ||||| ||||| ||
Sbjct 771089 CCCCCCCTGAGCCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCA 771148
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || ||||||||||||| || || ||| | || | |||||||||||| ||
Sbjct 771149 AGAGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGG 771208
Query 21069 ACGCCTTCCTTGTC 21082
| ||| ||||||||
Sbjct 771209 ATGCCCTCCTTGTC 771222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259097074320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |