Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq16 125 6e-24 seq8 105 6e-18 seq3 87.8 2e-12 seq18 84.2 2e-11 >seq16 Length=4450370 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||||||||| || ||||| || ||||||||||||| || || Sbjct 3338500 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCG 3338441 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||||| ||| | ||| |||||||| |||||| ||| Sbjct 3338440 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTC 3338381 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || || |||| |||| || |||||||||||||| | || Sbjct 3338380 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTGCCGGTAAGAGTC 3338321 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 3338320 TTGACGAAGATCTGCAT 3338304 >seq8 Length=7641483 Score = 105 bits (116), Expect = 6e-18 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | |||| || |||||||| || ||||| |||||||| Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || ||||||| ||||| || || || | || || | |||||||||| || Sbjct 6351953 AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGT 6352012 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| || || | |||| Sbjct 6352013 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACC 6352072 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || || | || || || ||||| ||||| Sbjct 6352073 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119 >seq3 Length=8976907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | |||||||| || | |||||||||||||| ||||| || ||||| Sbjct 8499990 TCCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCCGC 8500049 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC 21040 |||||| || ||||||||||||| ||||| || Sbjct 8500050 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGC 8500082 >seq18 Length=4131207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| | ||||| | |||| || | || |||||||| || ||||| ||||| || Sbjct 771089 CCCCCCCTGAGCCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCA 771148 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||||||||| || || ||| | || | |||||||||||| || Sbjct 771149 AGAGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGG 771208 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 771209 ATGCCCTCCTTGTC 771222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259097074320