Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 419 2e-112 seq16 154 2e-32 seq8 134 1e-26 seq2 118 1e-21 seq3 102 8e-17 seq18 89.7 5e-13 seq15 89.7 5e-13 seq12 87.8 2e-12 >seq7 Length=7914316 Score = 419 bits (464), Expect = 2e-112 Identities = 614/862 (71%), Gaps = 14/862 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| | ||||||| ||||||| || ||||| || |||||| | Sbjct 1959533 GAGCCCCTGCTGGCGGCGAACCCCGACCGGTTCTGCATGTTCCCGATCAGGTACCCGCAG 1959474 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| |||||||| ||||| |||||||| |||||||| | |||||||||||||| Sbjct 1959473 ATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCTC 1959414 Query 116696 TCCAAGGACACGAGCGACTGGGAGCG---CTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||| | ||| | ||||||||| | | | || | |||||||||| ||||||| Sbjct 1959413 TCCCACGACCTCCGGCACTGGGAGCAGGACCTCACCGCCGACGAGCGCCACTTCATCACC 1959354 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| ||||| ||| |||||||||||| |||||| |||| | || Sbjct 1959353 CACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCATCGTGCTCGAGAACCTGGCSGGCCGC 1959294 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||||| ||||| |||||||| || |||||||||||| ||||||||||| Sbjct 1959293 TTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 1959234 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | ||||| || ||||| |||| | || || ||| | || ||| Sbjct 1959233 GAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATCAAGGACTCCGAG 1959174 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 | ||| ||| | || |||| | || || | || ||||| |||||||| Sbjct 1959173 GCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTCCCCTGCGTGGCCCGCAAGGCCGAC 1959114 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| || |||||||||| | | ||| |||||| ||||||||| || |||||| Sbjct 1959113 TGGGCCCTCCGCTGGATCGACTCCTCCGAG---TCCTTCGCCGAGCGCCTCGTCGCCTTC 1959057 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || |||||||||| ||||||| || ||||| ||| |||||| || ||||||||||| Sbjct 1959056 GCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAG 1958997 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 |||||||||||||||||||| || ||| |||||||||||||||| | |||||||| || Sbjct 1958996 CGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTC 1958937 Query 117173 CATTGCGACTTTGCCTGTTTGCTGT--TCAAGCATTTGGTGC-AGCGACCGAGCGCGGCG 117229 || |||||||| ||||| | || | || | | | | | ||| || || | Sbjct 1958936 CACTGCGACTTCGCCTGCCTCCTCTACTCCCTCCTCCGCTCCAAGCTCCC---CGACGAC 1958880 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 ||| || | | |||||| ||||||| |||| ||||||| | |||| || ||| || Sbjct 1958879 CGCCTCCGCGCCATCGTCGCCGACGCCGTCGAGATCGAGCGGGACTTCGTCTGCGACGCC 1958820 Query 117290 CTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGT 117348 || || |||| || | || | ||| | ||| | || |||||||||||||| Sbjct 1958819 CT-CCCCTGCGCGCTCGTCGGCATGAATCAGGCCCTCATGGCCCAGTACATCGAGTTCGT 1958761 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408 ||||||| | || || |||| || | | | ||||| |||| || | ||||||| | Sbjct 1958760 CGCCGACCGCCTCCTCCTCGCCCTCGGCCACCCCAAGATCTACCACGCCGCCAACCCCTT 1958701 Query 117409 GGACTTTATGAACCTCATCTCC 117430 |||| ||| | ||||||||| Sbjct 1958700 CGACTGGATGGAGCTCATCTCC 1958679 Score = 118 bits (130), Expect = 1e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || ||||| |||| || || | | Sbjct 4181103 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 4181162 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||| | ||||| ||||| |||||||| Sbjct 4181163 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 4181222 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || |||| | | || ||| ||||||||| Sbjct 4181223 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 4181282 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | ||||| || || ||| | ||| || | || || Sbjct 4181283 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGG 4181329 >seq16 Length=4450370 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || || || | Sbjct 3338304 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGYTGGAGGTGGAGTCCTCG 3338363 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||||||| ||||||| Sbjct 3338364 GACACCATCGACAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3338422 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| |||| ||||||||| |||||| || Sbjct 3338423 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAA 3338482 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| ||||||| || || || | || | ||||| ||| Sbjct 3338483 CATCCAGAAGGAGTCCACGCTCCACCTGGTCCTTCGTCTCAGGGGAGGC 3338531 >seq8 Length=7641483 Score = 134 bits (148), Expect = 1e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || |||||||| || || |||||| |||| || || | | Sbjct 6352119 ATGCAGATATTCGTGAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCY 6352060 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || || || || ||||||| Sbjct 6352059 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGGATACCACCGGACCA 6352001 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||||| || |||| || ||||| |||||||| Sbjct 6352000 GCAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCGGACTACAA 6351941 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | || ||||| || ||| | ||| Sbjct 6351940 CATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCGC 6351904 >seq2 Length=11374105 Score = 118 bits (130), Expect = 1e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || ||||| |||| || || | | Sbjct 483865 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 483806 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||| | ||||| ||||| |||||||| Sbjct 483805 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 483746 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || |||| | | || ||| ||||||||| Sbjct 483745 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 483686 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | ||||| || || ||| | ||| || | || || Sbjct 483685 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGG 483639 >seq3 Length=8976907 Score = 102 bits (112), Expect = 8e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || |||||| | || || || || || Sbjct 8500627 ATGCAGATCTTCGTGAAGACTCTCACCGGGAAGACTATCACCCTTGAGGTGGAGTCCTCC 8500568 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| || || | ||||| |||||||||||| ||||||| Sbjct 8500567 GATACCATCGACAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 8500509 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG 40846 ||| | || |||| ||| ||||| |||||||| |||| Sbjct 8500508 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACG 8500471 >seq18 Length=4131207 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || | || | || || || |||||||| Sbjct 771222 GACAAGGAGGGCATCCCTCCAGACCAGCAGAGATTGATATTTGCTGGGAAGCAGCTGGAG 771163 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || ||||||||||||||||||||| | || || || || || ||| Sbjct 771162 GACGGCCGCACTCTTGCAGACTACAACATCCAGAAGGAGTCGACCCTTCACCTGGTCTTG 771103 Query 40903 CGCTTGAGGGGCGG 40916 | | ||||| || Sbjct 771102 AGGCTCAGGGGGGG 771089 >seq15 Length=5171376 Score = 89.7 bits (98), Expect = 5e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 73584 AACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAGTGCCCTACTGGGTGTTC 73643 ||||||||||| ||| ||||| ||||||||||||||||| || ||||||||| | || Sbjct 523804 AACCACGCCGTTCTGGCAGTCGGGTACGGCGTCGAGAACGGCGTCCCCTACTGGCTCATC 523863 Query 73644 AAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTC 73685 |||||| | ||||| | |||||| || ||||| || ||| Sbjct 523864 AAGAACTCCTGGGGGCAGAGCTGGGGAGATAACGGGTACTTC 523905 >seq12 Length=5901629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||| ||||| || ||||||| || || || ||||| || |||| |||| Sbjct 209786 GGCATCCCGCCGGATCAGCAGCGCCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGGCGC 209727 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| |||||||||||||||||| Sbjct 209726 ACCCTCGCCGACTACAACATCCAGAA 209701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219071195200