Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq16 116 3e-21 seq7 105 6e-18 seq2 105 6e-18 seq8 98.7 9e-16 seq3 82.4 7e-11 >seq16 Length=4450370 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || ||||| || ||| | ||||| ||||| Sbjct 3338512 ACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCC 3338453 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 3338452 AGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 3338393 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| | ||| ||||| | || | || ||| Sbjct 3338392 ATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTG 3338333 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || |||||||| Sbjct 3338332 CCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 >seq7 Length=7914316 Score = 105 bits (116), Expect = 6e-18 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | | ||| | ||||| || ||||| || || || ||||| ||| Sbjct 4181330 ACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGC 4181271 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | | ||||||||||| || || ||| ||||||| |||||||| || || || Sbjct 4181270 GAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 4181211 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||| ||| || || || || | |||| ||||| | ||| || Sbjct 4181210 GATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTAC 4181151 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || | ||| || || ||||| || || || || |||||||||||| Sbjct 4181150 CTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 4181099 >seq2 Length=11374105 Score = 105 bits (116), Expect = 6e-18 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | | ||| | ||||| || ||||| || || || ||||| ||| Sbjct 483638 ACCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGC 483697 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | | ||||||||||| || || ||| ||||||| |||||||| || || || Sbjct 483698 GAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 483757 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||| ||| || || || || | |||| ||||| | ||| || Sbjct 483758 GATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATTGTCGATAGTGTCAGAAGACTCTAC 483817 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || | ||| || || ||||| || || || || |||||||||||| Sbjct 483818 CTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATGGCT 483869 >seq8 Length=7641483 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCT 118570 |||||||| | | | ||| | ||| | || ||||| || || |||||||| || ||| Sbjct 6351893 CCTCCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCT 6351952 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || || ||||||||||| || || ||| |||| || |||||||| || || || Sbjct 6351953 -AGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 6352011 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||| || |||||||| || || || || | |||| |||||| | ||| || Sbjct 6352012 TATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCAC 6352071 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | ||| || || || || || || || || |||||||| Sbjct 6352072 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119 >seq3 Length=8976907 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| ||||| || || ||| |||| || | |||||| || || || |||||||||||| Sbjct 8500473 TCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTG 8500532 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| ||| || | | ||| ||||| | ||| | Sbjct 8500533 TCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATA 8500592 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| ||||| || || || |||||||| Sbjct 8500593 GTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830294253840