Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7 109 6e-19 seq2 109 6e-19 seq16 107 2e-18 seq8 96.9 4e-15 >seq7 Length=7914316 Score = 109 bits (120), Expect = 6e-19 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || ||||| | | |||| || |||||||| || ||||| Sbjct 4181294 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 4181235 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | | ||||| |||| ||| || || | | Sbjct 4181234 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 4181175 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || |||| |||||| || || ||||| || ||||| || Sbjct 4181174 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 4181115 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 4181114 GAAGATCTGCAT 4181103 >seq2 Length=11374105 Score = 109 bits (120), Expect = 6e-19 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || ||||| | | |||| || |||||||| || ||||| Sbjct 483674 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 483733 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | | ||||| |||| ||| || || | | Sbjct 483734 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 483793 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || |||| |||||| || || ||||| || ||||| || Sbjct 483794 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 483853 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 483854 GAAGATCTGCAT 483865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/89 (83%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 764797 AAAAAGTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 764738 Query 60117 TCACCACTATACTAC--CGA--GGATTGA 60141 ||||||||||||||| ||| ||||||| Sbjct 764737 TCACCACTATACTACAACGACTGGATTGA 764709 >seq16 Length=4450370 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | |||| || | ||| |||||| || || || || || || Sbjct 3338530 CCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCG 3338471 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 3338470 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 3338411 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || || | ||| | | | ||||| || ||||| Sbjct 3338410 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 3338352 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||| ||||| || || ||||| || ||||| ||||| Sbjct 3338351 CTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 >seq8 Length=7641483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 6351928 CTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 6351987 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 6351988 GATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 6352046 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| |||| ||||| || || ||||| || ||||| | Sbjct 6352047 TGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCA 6352106 Query 43171 CAAAGATTTGCATTTTTACGCCGA 43194 | || || ||||| || | |||| Sbjct 6352107 CGAATATCTGCATCCTTGCTCCGA 6352130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817457045600