Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq16 120 2e-22
seq8 102 6e-17
seq18 82.4 6e-11
>seq16
Length=4450370
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| |||||| ||||||||| ||||| |||||| || ||| |||| |||
Sbjct 3338512 ACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCC 3338453
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| |||| ||||| ||||| || || | ||||||||||||
Sbjct 3338452 AGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 3338393
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| ||||||||||| || || ||||||
Sbjct 3338392 ATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTG 3338333
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || |||||||| || ||||| |||||
Sbjct 3338332 CCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304
>seq8
Length=7641483
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| || ||||||||| ||||||||||| || || |||| || || ||
Sbjct 6351916 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCCTCGAGCTG 6351975
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| |||||||| |||| |||||| ||||| || || | || ||||||||| || ||
Sbjct 6351976 CTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTGGATCTT 6352035
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | |||| | ||||||||| | ||| |||||||| |||||
Sbjct 6352036 GGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGT 6352095
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||| || || |||||
Sbjct 6352096 GAGGGTCTTCACGAATATCTGCAT 6352119
>seq18
Length=4131207
Score = 82.4 bits (90), Expect = 6e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181
|| || |||| ||| || || ||||||||| ||||||||||| || ||| ||
Sbjct 771101 CTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGGCCG 771160
Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241
|| ||||| || || || || |||||||| | ||| ||||| ||||| | |||||||||
Sbjct 771161 TCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGGATGCCCTCCTTG 771220
Query 45242 TCC 45244
|||
Sbjct 771221 TCC 771223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075103700420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |