Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7 143 2e-29 seq16 98.7 9e-16 seq2 91.5 1e-13 seq8 87.8 2e-12 >seq7 Length=7914316 Score = 143 bits (158), Expect = 2e-29 Identities = 553/861 (64%), Gaps = 24/861 (3%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| ||||| || || | || ||| | |||||||| ||||| || || || || Sbjct 1959498 CATGTTCCCGATCAGGTACCCGCAGATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTT 1959439 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC---CCTCAA 57661 ||||| | || || || ||||| || | || || | | ||||| ||||| Sbjct 1959438 CTGGACGGCGGAGGAGGTGGACCTCTCCCACGACCTCCGGCACTGGGAGCAGGACCTCAC 1959379 Query 57662 AGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 | ||| | | || || | ||||| | || || ||||| || ||||| || || Sbjct 1959378 CGCCGACGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCAT 1959319 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 || |||||| ||| | | || | || || || || | ||||| | Sbjct 1959318 CGTGCTCGAGAACCTGGCSGGCCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGC 1959259 Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||| ||||| || || | ||||| || ||| | || || || ||||| || ||| | Sbjct 1959258 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCT 1959199 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 || || ||| | |||||| ||| | || | || ||| ||| | || || | Sbjct 1959198 GGAGACCTACATCAAGGACTCCGAGGCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGT 1959139 Query 57902 GCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA 57960 ||| ||| | ||| ||||| || ||| | || ||||| | | || | || Sbjct 1959138 CCCCTGCG-TGGCCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACTCCTCCGAGTCC- 1959081 Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020 ||||||||| | || |||| |||||| |||||| || || ||||| || ||||||| Sbjct 1959080 --TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCT 1959023 Query 58021 T-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 | |||| || | || ||| | ||||| |||||||| ||||||||||| || || |||| Sbjct 1959022 TCTGCGCCA-TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1958964 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||| | || || ||||||||||| ||||| || || || ||||| | ||||| | | Sbjct 1958963 GAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCCTC 1958904 Query 58140 ATTGTCAATAA----ACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 | | || ||||| || ||| || | ||| || |||| || |||| Sbjct 1958903 CTCCGCTCCAAGCTCCCCGAC----GACCGCCTCCGCGCCATCGTCGCCGACGCCGTCGA 1958848 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255 |||||| || || ||| ||| ||||| || || | |||| ||||| | | Sbjct 1958847 GATCGAGCGGGACTTCGTCTGCGACGCCCTCCCCTGCGCGCTCGTCGGCATGAATCAGGC 1958788 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGA 58315 | ||| | ||||||| ||||| || |||||| | || | |||| | | || | Sbjct 1958787 CCTCATGGCCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCCTCGCCC---TCGGCCA 1958731 Query 58316 GCGTCA---TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGG 58372 | | ||| || | || || || || | ||| | || ||||| ||| |||| Sbjct 1958730 CCCCAAGATCTACCACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGG 1958671 Query 58373 CAAGACAAACTTTTTCGAAAA 58393 |||||| ||||| ||||| || Sbjct 1958670 CAAGACCAACTTCTTCGAGAA 1958650 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| || || |||||||| |||| || || | || Sbjct 4181102 CATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTC 4181161 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | || || | || |||| |||| || | ||||| ||||| Sbjct 4181162 TGACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCA 4181221 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| || || ||| | || ||| | ||| | ||| || || Sbjct 4181222 GCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAA 4181281 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| || || || || || | ||| | || ||| Sbjct 4181282 TATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGGT 4181330 >seq16 Length=4450370 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || ||||| | || || || | || Sbjct 3338304 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGYTGGAGGTGGAGTCCTCG 3338363 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| ||| | || || |||||| Sbjct 3338364 GACACCATCGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3338423 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| |||| ||| || | ||| |||||| Sbjct 3338424 CAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAAC 3338483 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || || ||||| ||| | || ||||| || Sbjct 3338484 ATCCAGAAGGAGTCCACGCTCCACCTGGTCCTTCGTCTCAGGGGAGG 3338530 >seq2 Length=11374105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| || || |||||||| |||| || || | || Sbjct 483866 CATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTC 483807 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | || || | || |||| |||| || | ||||| ||||| Sbjct 483806 TGACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCA 483747 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| || || ||| | || ||| | ||| | ||| || || Sbjct 483746 GCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAA 483687 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| || || || || || | ||| | || ||| Sbjct 483686 TATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGGT 483638 >seq8 Length=7641483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/241 (69%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || ||||||||| |||| || || | || Sbjct 6352119 ATGCAGATATTCGTGAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCY 6352060 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || || |||||| Sbjct 6352059 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATACCACCGGACCAG 6352000 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||||| || || ||||| || || ||| | || ||| || | ||| || || || Sbjct 6351999 CAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCT-AGCGGACTACAA 6351941 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT-----GAGGGGCGGTAGAAGC 31426 ||| || || || ||||| || || || || || | || ||||||| | |||||| Sbjct 6351940 CATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCGCCTCCGCGGAGGGGC-GAAGAAGC 6351882 Query 31427 G 31427 | Sbjct 6351881 G 6351881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766288558400