Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq19 113 6e-20
>seq19
Length=3929835
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
||| || ||||| | || | ||| |||| ||| | || | ||||||||||| ||| ||
Sbjct 2578423 TCCACCTTGATCAACATACCGAGCAGTGTCATTGAAGACCCGCAACATTGGAACAATGCC 2578364
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| |||||||| || || || |||||| || ||| | || ||||||||| || ||
Sbjct 2578363 ATTAGATGTACCGTTCGTTCCACGGATATAACTGCCAGTTGCTCGAATATTATGAACAGA 2578304
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| ||||| || || ||| || | |||||| || || || ||||| ||
Sbjct 2578303 AACACCGATTCCTCCAGCAGATTTGCTTATAACCGCGCATTCCTTCAATGTGTCATAAAT 2578244
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
|| || ||||||||||| ||||| || ||| || |||||
Sbjct 2578243 TCCTTCAATGCTATCATCTTTCATGCAAATTAGGAAGCAGCT 2578202
Score = 86.0 bits (94), Expect = 9e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393
||| || ||||| ||||| || |||||||| || || ||||| | ||||| ||||
Sbjct 2578091 AGTGCCAGCATTGAATAATGTGGGAGAAGCATGAGTGAACCAGCGCTGAGACATCAGATG 2578032
Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452
|||||| | | | || | ||||| | ||| || ||||| || | || | ||| |
Sbjct 2578031 ATACGTCCTGAGAACAGAGACAATATCGTCCTTG-TGGATTCCAACTGAAACCCTCATCA 2577973
Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512
||||||||| || ||||||| | |||| | ||||| | || || | ||||
Sbjct 2577972 GCATGTGCTGTGGCCTTTCAATCACCTTGCCTGAAACTTTCATGAGATAGGACCTCTCCA 2577913
Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
|||||||| ||||| || | || ||| ||||| |||||||||||
Sbjct 2577912 GGGTTTTAAAGCCAAAGTAATCATAGTCAAAATCTCGATCGTAAATAAT 2577864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268620432800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |