Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq19 113 6e-20 >seq19 Length=3929835 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | ||| |||| ||| | || | ||||||||||| ||| || Sbjct 2578423 TCCACCTTGATCAACATACCGAGCAGTGTCATTGAAGACCCGCAACATTGGAACAATGCC 2578364 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||||||| || || || |||||| || ||| | || ||||||||| || || Sbjct 2578363 ATTAGATGTACCGTTCGTTCCACGGATATAACTGCCAGTTGCTCGAATATTATGAACAGA 2578304 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| || | |||||| || || || ||||| || Sbjct 2578303 AACACCGATTCCTCCAGCAGATTTGCTTATAACCGCGCATTCCTTCAATGTGTCATAAAT 2578244 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || || ||||||||||| ||||| || ||| || ||||| Sbjct 2578243 TCCTTCAATGCTATCATCTTTCATGCAAATTAGGAAGCAGCT 2578202 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| ||||| || |||||||| || || ||||| | ||||| |||| Sbjct 2578091 AGTGCCAGCATTGAATAATGTGGGAGAAGCATGAGTGAACCAGCGCTGAGACATCAGATG 2578032 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 |||||| | | | || | ||||| | ||| || ||||| || | || | ||| | Sbjct 2578031 ATACGTCCTGAGAACAGAGACAATATCGTCCTTG-TGGATTCCAACTGAAACCCTCATCA 2577973 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||||| || ||||||| | |||| | ||||| | || || | |||| Sbjct 2577972 GCATGTGCTGTGGCCTTTCAATCACCTTGCCTGAAACTTTCATGAGATAGGACCTCTCCA 2577913 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||| ||||| || | || ||| ||||| ||||||||||| Sbjct 2577912 GGGTTTTAAAGCCAAAGTAATCATAGTCAAAATCTCGATCGTAAATAAT 2577864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268620432800